C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox C11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123388 HOXC11 9606 + 12:53973126-53977643 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243082 HOXC11-002 53973128-53976419 protein_coding
  ENST00000546378 HOXC11-001 53973126-53977643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyMuscleOvaryPlacentaTestisENST00000243082ENST00000546378
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Muscle Ovary Placenta Testis
ENST00000243082 1.392±0.00 0.828±0.00 0.014±0.00 0.125±0.00 0.101±0.00 0.616±0.00 0.683±0.00 2.260±2.64 0.395±0.21 0.765±0.30
ENST00000546378 N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TO CIL_0002TO_0002 CGP 12:53954834-53977643
CIL_00003G CIL_00003G_0001 CGP 12:53973126-53990279

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001501 IEA skeletal system development
GO:0001656 IEA metanephros development
GO:0001759 IEA organ induction
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007492 TAS endoderm development
GO:0009952 IEA anterior/posterior pattern specification
GO:0009954 IEA proximal/distal pattern formation
GO:0042733 IEA embryonic digit morphogenesis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060272 IEA embryonic skeletal joint morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070351 hoxc11a homeo box C11a protein_coding Danio_rerio
ENSDARG00000079406 hoxc11b homeo box C11b protein_coding Danio_rerio
ENSMUSG00000001656 Hoxc11 homeobox C11 protein_coding Mus_musculus

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