C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: adenosylmethionine decarboxylase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123505 AMD1 9606 + 6:110814621-110895713 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368876 AMD1-002 110875575-110895713 protein_coding
  ENST00000368877 AMD1-005 110874785-110893982 protein_coding
  ENST00000368882 AMD1-201 110874784-110895708 protein_coding
  ENST00000368885 AMD1-003 110874770-110895713 protein_coding
  ENST00000451850 AMD1-001 110874770-110895713 nonsense_mediated_decay
  ENST00000465404 AMD1-004 110892825-110894061 nonsense_mediated_decay
  ENST00000610605 AMD1-202 110814621-110895708 protein_coding
  ENST00000612642 AMD1-006 110888286-110895712 retained_intron
  ENST00000619590 AMD1-007 110890789-110895704 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368876ENST00000368877ENST00000368882ENST00000368885ENST00000451850ENST00000465404ENST00000610605ENST00000612642ENST00000619590
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368876 N/A 7.565±0.00 N/A N/A 2.991±0.00 4.643±0.00 N/A 8.154±0.00 N/A N/A N/A 3.675±1.14 3.152±0.00 11.646±0.00
ENST00000368877 N/A N/A 4.983±0.00 8.089±0.00 5.324±0.00 3.654±0.00 4.321±0.00 1.291±0.00 3.621±0.00 N/A 2.018±0.26 11.427±0.00 N/A N/A
ENST00000368882 N/A N/A N/A N/A N/A 4.078±0.00 N/A N/A 3.736±0.00 3.827±1.32 1.580±0.00 4.025±0.00 N/A 4.020±0.00
ENST00000368885 6.301±0.00 7.478±0.00 N/A 15.071±3.47 4.159±0.03 8.725±4.03 11.371±7.47 9.119±6.30 5.521±1.72 8.471±3.72 1.767±1.50 18.031±10.50 14.632±0.67 11.723±0.80
ENST00000451850 N/A N/A N/A N/A N/A N/A N/A N/A 2.357±0.00 N/A 0.323±0.00 N/A N/A N/A
ENST00000465404 N/A N/A N/A 13.529±0.00 N/A 7.650±0.00 N/A 3.323±0.00 N/A N/A 2.699±0.00 N/A N/A N/A
ENST00000610605 3.481±0.00 N/A N/A 4.893±0.00 2.060±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.835±0.00
ENST00000612642 N/A N/A N/A N/A 0.850±0.00 1.266±0.00 N/A N/A 0.977±0.00 1.782±0.00 N/A N/A N/A N/A
ENST00000619590 N/A N/A N/A N/A 1.077±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OV CIL_0001OV_0002 CGP 6:110609978-110895713

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004014 IEA adenosylmethionine decarboxylase activity
GO:0005829 TAS cytosol
GO:0006557 IEA S-adenosylmethioninamine biosynthetic process
GO:0006595 TAS polyamine metabolic process
GO:0006597 IEA spermine biosynthetic process
GO:0008295 IEA spermidine biosynthetic process
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043856 amd1 adenosylmethionine decarboxylase 1 protein_coding Danio_rerio
ENSMUSG00000063953 Amd2 S-adenosylmethionine decarboxylase 2 protein_coding Mus_musculus
ENSMUSG00000075232 Amd1 S-adenosylmethionine decarboxylase 1 protein_coding Mus_musculus

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