C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124228 DDX27 9606 + 20:49219295-49244077 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371764 DDX27-001 49219347-49244077 protein_coding
  ENST00000462328 DDX27-004 49219432-49226466 nonsense_mediated_decay
  ENST00000471144 DDX27-006 49233838-49244077 retained_intron
  ENST00000484427 DDX27-002 49219347-49244077 retained_intron
  ENST00000493252 DDX27-005 49224954-49233643 protein_coding
  ENST00000618172 DDX27-007 49219416-49244070 protein_coding
  ENST00000622530 DDX27-201 49219295-49244075 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371764ENST00000618172
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371764 N/A N/A 1.880±0.00 2.073±0.00 N/A N/A N/A N/A N/A N/A N/A 5.754±0.00 N/A 20.831±1.75
ENST00000618172 16.542±0.00 23.815±0.00 N/A 10.221±0.00 16.183±0.00 11.401±7.12 6.265±0.00 20.056±0.00 4.843±1.46 4.011±0.00 8.182±6.31 32.767±7.75 19.011±1.38 19.042±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T2 CIL_0001T2_0001 CGP 20:49113339-49244077
CIL_000279 CIL_000279_0001 CGP 20:49219295-49278426

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016787 IEA hydrolase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091831 ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 protein_coding Danio_rerio
ENSMUSG00000017999 Ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 protein_coding Mus_musculus

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