C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pregnancy specific beta-1-glycoprotein 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124467 PSG8 9606 - 19:42752686-42855691 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306511 PSG8-008 42754233-42765679 protein_coding
  ENST00000401467 PSG8-009 42752727-42855691 protein_coding
  ENST00000404209 PSG8-001 42752686-42765678 protein_coding
  ENST00000406636 PSG8-003 42752725-42765662 protein_coding
  ENST00000466163 PSG8-005 42752691-42756124 retained_intron
  ENST00000469260 PSG8-007 42754988-42765667 processed_transcript
  ENST00000478387 PSG8-006 42754992-42765669 nonsense_mediated_decay
  ENST00000593692 PSG8-004 42763692-42765663 retained_intron
  ENST00000600709 PSG8-010 42752692-42758895 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonOvaryPlacentaTestisENST00000404209ENST00000406636ENST00000466163ENST00000469260ENST00000593692ENST00000600709
Transcript ID Adipose Adrenal Brain Breast Colon Ovary Placenta Testis
ENST00000404209 N/A N/A N/A N/A N/A N/A 17.476±13.83 N/A
ENST00000406636 N/A N/A N/A N/A N/A N/A 12.739±0.00 N/A
ENST00000466163 0.022±0.00 0.006±0.00 0.068±0.01 0.029±0.00 N/A 0.093±0.00 N/A 0.022±0.00
ENST00000469260 N/A N/A N/A N/A N/A N/A N/A 0.038±0.00
ENST00000593692 0.039±0.00 N/A N/A N/A N/A 0.799±0.00 N/A 0.059±0.00
ENST00000600709 N/A N/A N/A N/A 0.034±0.00 0.184±0.00 8.139±8.76 0.042±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UJ CIL_0003UJ_000I CGP 19:42721638-43205603
CIL_0003UJ CIL_0003UJ_000G CGP 19:42728080-43205603
CIL_0003UJ CIL_0003UJ_000E CGP 19:42752686-42879822

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041119 ceacam1 carcinoembryonic antigen-related cell adhesion molecule 1 protein_coding Danio_rerio
ENSDARG00000076981 zgc:198329 zgc:198329 protein_coding Danio_rerio
ENSDARG00000078177 cxcr3.1 chemokine (C-X-C motif) receptor 3, tandem duplicate 1 protein_coding Danio_rerio
ENSDARG00000079372 si:ch211-264f5.6 si:ch211-264f5.6 protein_coding Danio_rerio
ENSDARG00000092520 si:dkey-250k15.10 si:dkey-250k15.10 protein_coding Danio_rerio
ENSDARG00000093279 si:dkey-11o1.3 si:dkey-11o1.3 protein_coding Danio_rerio
ENSDARG00000095048 si:dkey-250k15.7 si:dkey-250k15.7 protein_coding Danio_rerio
ENSDARG00000095134 si:dkey-250k15.9 si:dkey-250k15.9 protein_coding Danio_rerio
ENSDARG00000095772 si:dkey-11o1.2 si:dkey-11o1.2 protein_coding Danio_rerio

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