C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 9, X-linked
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124486 USP9X 9606 + X:41085635-41236579 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324545 USP9X-003 41085635-41236579 protein_coding
  ENST00000378308 USP9X-001 41085635-41232597 protein_coding
  ENST00000462850 USP9X-009 41195905-41198571 nonsense_mediated_decay
  ENST00000463829 USP9X-007 41188066-41189922 retained_intron
  ENST00000465386 USP9X-008 41183994-41184740 retained_intron
  ENST00000467173 USP9X-002 41167145-41168242 retained_intron
  ENST00000485180 USP9X-010 41228983-41229896 retained_intron
  ENST00000487625 USP9X-004 41205059-41210654 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324545ENST00000378308
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324545 N/A N/A N/A 4.399±0.00 3.071±0.00 3.321±0.00 N/A 2.803±0.00 5.208±0.00 3.723±0.00 N/A 4.006±0.84 4.296±0.36 4.908±0.00
ENST00000378308 11.154±0.00 5.298±0.00 7.492±0.00 9.345±0.90 9.238±1.39 7.694±1.44 8.138±0.68 10.105±3.24 9.469±6.32 7.929±2.17 13.974±1.64 3.820±3.36 4.372±0.49 7.214±2.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QE CIL_0005QE_0001 CGP X:40648306-41236579
CIL_0005QB CIL_0005QB_0001 CGP X:41085635-41364472

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IEA in utero embryonic development
GO:0001764 IMP neuron migration
GO:0004197 TAS cysteine-type endopeptidase activity
GO:0004221 TAS ubiquitin thiolesterase activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0007179 IMP transforming growth factor beta receptor signaling pathway
GO:0007292 TAS female gamete generation
GO:0008234 TAS cysteine-type peptidase activity
GO:0009791 IEA post-embryonic development
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016579 IDA protein deubiquitination
GO:0021698 IEA cerebellar cortex structural organization
GO:0021766 IEA hippocampus development
GO:0030426 IDA growth cone
GO:0030509 IDA BMP signaling pathway
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0045177 IEA apical part of cell
GO:0048675 IMP axon extension
GO:0070410 IPI co-SMAD binding
GO:0071560 IEA cellular response to transforming growth factor beta stimulus
GO:1990138 IEA neuron projection extension

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013708 usp9 ubiquitin specific peptidase 9 protein_coding Danio_rerio
ENSMUSG00000031010 Usp9x ubiquitin specific peptidase 9, X chromosome protein_coding Mus_musculus

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