C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: exportin 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124571 XPO5 9606 - 6:43522330-43576075 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265351 XPO5-001 43522330-43576075 protein_coding
  ENST00000398799 XPO5-010 43570930-43575985 nonsense_mediated_decay
  ENST00000398835 XPO5-013 43528159-43547675 nonsense_mediated_decay
  ENST00000424378 XPO5-011 43551324-43559062 processed_transcript
  ENST00000450462 XPO5-004 43527186-43528867 retained_intron
  ENST00000455285 XPO5-015 43524534-43528913 protein_coding
  ENST00000455854 XPO5-009 43522337-43526625 retained_intron
  ENST00000486936 XPO5-005 43524534-43528204 nonsense_mediated_decay
  ENST00000488195 XPO5-006 43524477-43527064 retained_intron
  ENST00000496341 XPO5-012 43549534-43562333 nonsense_mediated_decay
  ENST00000513451 XPO5-007 43547686-43548470 retained_intron
  ENST00000612911 XPO5-014 43533353-43547681 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265351ENST00000398835ENST00000455854ENST00000612911
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265351 4.163±0.00 2.431±0.00 0.440±0.00 2.164±0.15 3.023±1.29 2.850±0.00 1.562±1.46 4.446±0.00 1.291±0.82 3.467±0.00 4.429±0.00 9.311±5.72 4.918±0.28 17.696±4.81
ENST00000398835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.765±0.00 N/A N/A N/A
ENST00000455854 N/A 1.072±0.00 0.411±0.00 N/A N/A N/A N/A N/A 0.923±0.00 N/A N/A N/A N/A N/A
ENST00000612911 N/A N/A N/A N/A N/A N/A N/A N/A 2.779±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0001 VISTA 6:43493027-44094540
CIL_0005N0 CIL_0005N0_0001 CGP 6:43509702-43529585

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0003723 TAS RNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006611 IEA protein export from nucleus
GO:0006886 IEA intracellular protein transport
GO:0008536 IEA Ran GTPase binding
GO:0008565 IEA protein transporter activity
GO:0010467 TAS gene expression
GO:0031047 IEA gene silencing by RNA
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078338 XPO5 exportin 5 protein_coding Danio_rerio
ENSMUSG00000067150 Xpo5 exportin 5 protein_coding Mus_musculus

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