C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: prickle homolog 4 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124593 PRICKLE4 9606 + 6:41780349-41790141 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335515 PRICKLE4-001 41780946-41789895 nonsense_mediated_decay
  ENST00000359201 PRICKLE4-201 41781358-41787372 protein_coding
  ENST00000456057 PRICKLE4-002 41780349-41790141 nonsense_mediated_decay
  ENST00000458694 PRICKLE4-202 41780762-41787372 protein_coding
  ENST00000487182 PRICKLE4-003 41780772-41789891 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonLungENST00000335515ENST00000359201ENST00000487182
Transcript ID Bladder Colon Lung
ENST00000335515 0.663±0.00 0.684±0.00 N/A
ENST00000359201 N/A 0.930±0.00 N/A
ENST00000487182 N/A N/A 1.161±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XI CIL_0008XI_0001 VISTA 6:41187113-41790491
CIL_00093V CIL_00093V_0001 VISTA 6:41255486-41855939
CIL_000963 CIL_000963_0001 VISTA 6:41292979-41894337
CIL_0001ZL CIL_0001ZL_0001 CGP 6:41780349-41790141

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 NAS nucleus
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000079444 Gm21981 predicted gene 21981 protein_coding Mus_musculus
ENSMUSG00000096549 Prickle4 prickle homolog 4 (Drosophila) protein_coding Mus_musculus

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