C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribonuclease P/MRP 40kDa subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124787 RPP40 9606 - 6:4994732-5004063 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319533 RPP40-002 4995047-5004036 protein_coding
  ENST00000380051 RPP40-001 4994732-5004047 protein_coding
  ENST00000464646 RPP40-006 4995078-5003658 protein_coding
  ENST00000468105 RPP40-004 4998688-5004047 retained_intron
  ENST00000479782 RPP40-005 4998828-5004018 nonsense_mediated_decay
  ENST00000483546 RPP40-003 5001776-5004063 retained_intron
  ENST00000618533 RPP40-201 4995049-5004063 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319533ENST00000380051ENST00000464646ENST00000468105ENST00000479782ENST00000618533
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319533 1.234±0.00 2.395±0.00 N/A 0.707±0.00 1.209±0.00 0.469±0.15 N/A 1.073±0.00 1.237±0.00 N/A N/A 0.648±0.02 0.948±0.02 1.064±0.00
ENST00000380051 N/A N/A N/A 0.091±0.00 N/A N/A 0.037±0.00 N/A 0.625±0.00 0.146±0.00 N/A 0.370±0.00 N/A 0.256±0.00
ENST00000464646 N/A N/A 0.986±0.00 N/A 0.738±0.08 N/A 0.053±0.00 0.305±0.00 N/A 0.267±0.00 N/A 0.853±0.28 0.405±0.11 0.817±0.41
ENST00000468105 N/A N/A N/A 1.216±0.00 N/A 0.872±0.00 N/A N/A 0.764±0.00 N/A N/A N/A N/A N/A
ENST00000479782 N/A N/A N/A N/A N/A 0.862±0.43 N/A 0.291±0.00 N/A N/A N/A 1.744±0.03 0.932±0.00 N/A
ENST00000618533 0.518±0.00 1.334±0.00 N/A 0.448±0.08 0.792±0.18 0.665±0.00 0.333±0.18 0.591±0.00 1.375±0.00 0.551±0.06 0.557±0.47 1.882±1.27 1.429±0.45 2.120±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000162 CIL_000162_0002 CGP 6:4706159-5004063
CIL_0003SE CIL_0003SE_0001 CGP 6:4994732-5089487

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004526 IEA ribonuclease P activity
GO:0005634 TAS nucleus
GO:0005655 TAS nucleolar ribonuclease P complex
GO:0008033 IEA tRNA processing
GO:0090501 TAS RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017605 rpp40 ribonuclease P 40 subunit protein_coding Danio_rerio
ENSMUSG00000021418 Rpp40 ribonuclease P 40 subunit protein_coding Mus_musculus

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