C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ataxin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124788 ATXN1 9606 - 6:16299112-16761491 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000244769 ATXN1-001 16299112-16761456 protein_coding
  ENST00000436367 ATXN1-201 16299112-16761490 protein_coding
  ENST00000467008 ATXN1-004 16736851-16761476 processed_transcript
  ENST00000473388 ATXN1-008 16485135-16761460 processed_transcript
  ENST00000479680 ATXN1-006 16752962-16761479 processed_transcript
  ENST00000483591 ATXN1-002 16432564-16750092 processed_transcript
  ENST00000483954 ATXN1-009 16666968-16761456 processed_transcript
  ENST00000492857 ATXN1-003 16739602-16761463 processed_transcript
  ENST00000495178 ATXN1-007 16614975-16753308 processed_transcript
  ENST00000498374 ATXN1-005 16738465-16761491 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000244769ENST00000436367ENST00000467008ENST00000473388
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000244769 N/A N/A N/A 3.653±2.11 N/A N/A N/A 0.359±0.00 0.324±0.00 0.956±0.00 N/A 0.943±0.11 N/A N/A
ENST00000436367 2.650±0.00 1.494±0.00 0.930±0.00 3.728±1.50 3.742±0.65 3.139±0.38 3.559±0.00 1.065±0.10 3.248±2.26 2.870±0.00 3.829±0.00 2.564±0.24 1.129±0.71 2.216±1.09
ENST00000467008 N/A 1.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.277±0.00 0.551±0.00 N/A
ENST00000473388 N/A N/A N/A N/A N/A 5.170±0.00 4.970±0.00 N/A 8.505±0.00 7.371±0.00 4.677±0.00 7.860±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RQ CIL_0003RQ_0001 CGP 6:16238580-16761491

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006396 NAS RNA processing
GO:0008022 IPI protein C-terminus binding
GO:0008219 IEA cell death
GO:0008266 IDA poly(U) RNA binding
GO:0008344 IEA adult locomotory behavior
GO:0008542 IEA visual learning
GO:0016363 IDA nuclear matrix
GO:0034046 IDA poly(G) binding
GO:0042272 IDA nuclear RNA export factor complex
GO:0042326 IEA negative regulation of phosphorylation
GO:0042405 IDA nuclear inclusion body
GO:0042802 IPI identical protein binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043569 IEA negative regulation of insulin-like growth factor receptor signaling pathway
GO:0043621 IDA protein self-association
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048286 IEA lung alveolus development
GO:0051168 IDA nuclear export
GO:0060079 IEA regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060862 atxn1b ataxin 1b protein_coding Danio_rerio
ENSDARG00000061687 atxn1a ataxin 1a protein_coding Danio_rerio
ENSMUSG00000046876 Atxn1 ataxin 1 protein_coding Mus_musculus

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