C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ssu-2 homolog (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125046 SSUH2 9606 - 3:8619400-8745040 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317371 SSUH2-005 8619595-8682071 protein_coding
  ENST00000341795 SSUH2-001 8619400-8652074 protein_coding
  ENST00000413305 SSUH2-002 8619406-8644794 nonsense_mediated_decay
  ENST00000415132 SSUH2-008 8619611-8658966 nonsense_mediated_decay
  ENST00000420394 SSUH2-003 8619406-8652061 nonsense_mediated_decay
  ENST00000427408 SSUH2-010 8630811-8644798 protein_coding
  ENST00000435138 SSUH2-007 8619601-8745036 nonsense_mediated_decay
  ENST00000455157 SSUH2-004 8619583-8677408 nonsense_mediated_decay
  ENST00000464494 SSUH2-015 8663744-8677403 processed_transcript
  ENST00000466215 SSUH2-011 8632076-8677352 processed_transcript
  ENST00000470009 SSUH2-014 8663741-8682079 processed_transcript
  ENST00000478513 SSUH2-016 8690635-8745040 processed_transcript
  ENST00000483845 SSUH2-013 8633881-8644794 processed_transcript
  ENST00000484585 SSUH2-012 8632081-8644798 processed_transcript
  ENST00000492435 SSUH2-009 8627655-8633715 processed_transcript
  ENST00000495366 SSUH2-006 8619600-8640015 retained_intron
  ENST00000544814 SSUH2-201 8619400-8644798 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000413305ENST00000415132ENST00000420394ENST00000427408ENST00000455157ENST00000466215ENST00000470009ENST00000478513ENST00000483845ENST00000492435ENST00000495366ENST00000544814
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000413305 N/A 0.076±0.00 N/A N/A N/A N/A 0.079±0.00 N/A N/A 0.155±0.00 N/A N/A
ENST00000415132 N/A 0.192±0.00 N/A 0.100±0.06 N/A 0.106±0.00 N/A 0.024±0.00 0.039±0.00 0.069±0.00 N/A 2.169±0.00
ENST00000420394 N/A 0.175±0.00 N/A N/A N/A 0.222±0.00 0.214±0.00 N/A N/A 0.484±0.21 0.117±0.05 N/A
ENST00000427408 N/A N/A N/A N/A 0.141±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000455157 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A 1.086±0.64
ENST00000466215 0.183±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470009 0.216±0.00 N/A N/A N/A 0.148±0.00 N/A N/A 0.102±0.00 N/A N/A N/A N/A
ENST00000478513 0.056±0.00 0.198±0.00 0.049±0.00 0.175±0.00 N/A 0.062±0.00 0.217±0.00 N/A 0.025±0.00 0.171±0.11 N/A N/A
ENST00000483845 N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492435 N/A 0.453±0.00 N/A N/A N/A N/A N/A N/A N/A 0.631±0.00 N/A N/A
ENST00000495366 N/A N/A 0.035±0.00 0.126±0.00 0.092±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000544814 N/A N/A N/A N/A 0.148±0.00 N/A N/A N/A N/A 0.219±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000001 CIL_000001_0001 CGP 3:8501707-8745040
CIL_0005S5 CIL_0005S5_0001 CGP 3:8619400-8841808

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0031072 IEA heat shock protein binding
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040938 SSUH2 ssu-2 homolog (C. elegans) protein_coding Danio_rerio
ENSMUSG00000034387 Ssu2 ssu-2 homolog (C. elegans) protein_coding Mus_musculus

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