C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family C (CFTR/MRP), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125257 ABCC4 9606 - 13:95019829-95301433 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376887 ABCC4-001 95019829-95301429 protein_coding
  ENST00000467685 ABCC4-005 95074216-95076019 processed_transcript
  ENST00000471041 ABCC4-003 95043680-95055819 processed_transcript
  ENST00000474158 ABCC4-004 95071730-95073776 processed_transcript
  ENST00000484109 ABCC4-002 95043320-95044329 processed_transcript
  ENST00000536256 ABCC4-006 95095769-95301433 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376887ENST00000536256
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376887 0.719±0.00 1.661±0.00 0.735±0.00 0.839±0.53 0.378±0.00 2.605±0.42 0.906±0.00 2.679±2.64 0.712±0.61 1.740±0.12 2.247±0.00 3.286±1.23 0.413±0.24 2.011±1.03
ENST00000536256 N/A N/A N/A N/A N/A N/A N/A 0.863±0.00 0.069±0.00 N/A 0.478±0.00 2.260±0.56 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KH CIL_0007KH_0001 UCNEbase 13:94662058-95022632
CIL_0008M7 CIL_0008M7_0001 VISTA 13:94666210-95267565
CIL_0008LV CIL_0008LV_0001 VISTA 13:94666262-95267596
CIL_0002F4 CIL_0002F4_0001 CGP 13:95019829-95579759

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0005524 IEA ATP binding
GO:0005886 IDA plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0007596 TAS blood coagulation
GO:0008150 ND biological_process
GO:0010033 IEA response to organic substance
GO:0010243 IEA response to organonitrogen compound
GO:0014070 IEA response to organic cyclic compound
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0016404 NAS 15-hydroxyprostaglandin dehydrogenase (NAD+) activity
GO:0016887 IEA ATPase activity
GO:0030168 TAS platelet activation
GO:0031088 IDA platelet dense granule membrane
GO:0042493 IEA response to drug
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0048661 IEA positive regulation of smooth muscle cell proliferation
GO:0055085 TAS:IEA transmembrane transport
GO:0055114 NAS oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058953 abcc4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein_coding Danio_rerio
ENSMUSG00000032849 Abcc4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein_coding Mus_musculus

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