C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired box 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125813 PAX1 9606 + 20:21705659-21718486 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000398485 PAX1-001 21705659-21715982 protein_coding
  ENST00000444366 PAX1-002 21706223-21715109 protein_coding
  ENST00000460221 PAX1-003 21705687-21709424 processed_transcript
  ENST00000485038 PAX1-004 21708270-21709277 retained_intron
  ENST00000613128 PAX1-201 21705659-21718486 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLungMuscleOvaryPlacentaTestisENST00000398485ENST00000444366ENST00000460221ENST00000613128
Transcript ID Breast Lung Muscle Ovary Placenta Testis
ENST00000398485 0.031±0.00 0.125±0.00 0.289±0.00 0.022±0.00 0.017±0.00 0.058±0.00
ENST00000444366 N/A N/A N/A 0.031±0.00 0.065±0.00 0.081±0.00
ENST00000460221 N/A N/A N/A N/A 0.335±0.00 N/A
ENST00000613128 N/A N/A N/A N/A 0.019±0.00 0.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VN CIL_0008VN_0001 VISTA 20:21207913-21809383
CIL_0001U0 CIL_0001U0_0001 CGP 20:21511010-21718486
CIL_0002XI CIL_0002XI_0001 CGP 20:21705659-22585455

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0001756 IEA somitogenesis
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007389 IEA pattern specification process
GO:0008283 IEA cell proliferation
GO:0043367 IEA CD4-positive, alpha-beta T cell differentiation
GO:0043374 IEA CD8-positive, alpha-beta T cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048538 IEA thymus development
GO:0060017 IEA parathyroid gland development
GO:0060349 IEA bone morphogenesis
GO:0061056 IEA sclerotome development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008203 pax1a paired box 1a protein_coding Danio_rerio
ENSDARG00000073814 pax1b paired box 1b protein_coding Danio_rerio
ENSMUSG00000037034 Pax1 paired box 1 protein_coding Mus_musculus

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