C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosome binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125844 RRBP1 9606 - 20:17613678-17682295 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000246043 RRBP1-201 17613678-17660507 protein_coding
  ENST00000360807 RRBP1-001 17613678-17682295 protein_coding
  ENST00000377807 RRBP1-202 17613678-17682283 protein_coding
  ENST00000377813 RRBP1-002 17613678-17682233 protein_coding
  ENST00000398782 RRBP1-003 17659606-17682295 protein_coding
  ENST00000455029 RRBP1-007 17614128-17682060 protein_coding
  ENST00000468428 RRBP1-004 17613678-17619817 retained_intron
  ENST00000470422 RRBP1-005 17613678-17623330 protein_coding
  ENST00000495501 RRBP1-006 17627360-17658932 nonsense_mediated_decay
  ENST00000610403 RRBP1-203 17613678-17659973 protein_coding
  ENST00000620641 RRBP1-008 17641445-17643085 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000246043ENST00000360807ENST00000377807ENST00000377813ENST00000398782ENST00000455029ENST00000610403
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000246043 8.880±0.00 10.052±0.00 N/A 4.788±0.00 6.030±0.00 6.252±0.00 3.637±0.00 12.846±0.00 22.411±0.00 20.280±0.00 4.445±0.00 38.869±7.06 75.966±15.92 12.777±0.80
ENST00000360807 9.377±0.00 8.017±0.00 N/A 2.184±1.87 N/A 6.407±0.00 N/A 15.512±0.00 N/A 10.433±0.00 N/A N/A N/A N/A
ENST00000377807 N/A N/A N/A N/A N/A 2.527±0.00 N/A 4.710±0.00 N/A N/A N/A N/A N/A N/A
ENST00000377813 18.027±0.00 8.815±0.00 2.536±0.00 4.487±4.21 9.756±4.44 6.508±2.80 1.511±1.12 8.217±3.69 10.394±7.60 5.719±2.59 0.187±0.00 22.855±12.07 31.942±4.90 9.277±3.34
ENST00000398782 N/A N/A N/A 0.865±0.00 N/A 6.156±0.00 0.635±0.00 9.756±0.00 3.058±0.00 N/A 0.483±0.00 8.157±0.00 N/A N/A
ENST00000455029 17.170±0.00 23.023±0.00 N/A N/A 12.788±7.31 7.707±3.26 N/A 8.754±0.00 1.846±0.00 17.341±0.00 N/A 58.368±48.12 108.184±0.00 23.448±7.94
ENST00000610403 14.671±0.00 11.321±0.00 1.181±0.00 10.194±0.00 20.778±0.00 16.941±0.00 1.780±0.00 32.069±0.00 35.400±0.00 23.253±0.00 3.573±0.00 30.869±0.00 N/A 26.336±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0001 VISTA 20:17559199-18160694
CIL_0002D9 CIL_0002D9_0001 CGP 20:17569863-17682295
CIL_0002DA CIL_0002DA_0001 CGP 20:17613678-17735871

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0004872 TAS receptor activity
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005840 TAS ribosome
GO:0006412 TAS translation
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0030176 IEA integral component of endoplasmic reticulum membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013763 rrbp1a ribosome binding protein 1 homolog a (dog) protein_coding Danio_rerio
ENSDARG00000041703 rrbp1b ribosome binding protein 1 homolog b (dog) protein_coding Danio_rerio
ENSMUSG00000027422 Rrbp1 ribosome binding protein 1 protein_coding Mus_musculus

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