C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stromal cell-derived factor 2-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128228 SDF2L1 9606 + 22:21642261-21644298 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000248958 SDF2L1-001 21642261-21644298 protein_coding
  ENST00000466935 SDF2L1-002 21642354-21643292 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000248958ENST00000466935
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000248958 18.310±0.00 48.660±0.00 0.444±0.00 3.597±2.86 8.709±6.20 22.616±19.64 4.364±4.12 44.754±41.84 71.842±70.84 25.258±24.44 8.337±0.00 23.731±14.95 28.193±8.20 30.786±7.38
ENST00000466935 N/A N/A 0.529±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PT CIL_0008PT_0001 VISTA 22:21299079-21900013

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0016020 IEA membrane
GO:0034976 IEA response to endoplasmic reticulum stress
GO:0042981 IEA regulation of apoptotic process
GO:0051087 IEA chaperone binding
GO:0051117 IEA ATPase binding
GO:0051787 IEA misfolded protein binding
GO:0071218 IEA cellular response to misfolded protein
GO:0071712 IEA ER-associated misfolded protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035631 sdf2l1 stromal cell-derived factor 2-like 1 protein_coding Danio_rerio
ENSMUSG00000022769 Sdf2l1 stromal cell-derived factor 2-like 1 protein_coding Mus_musculus

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