C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox D11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128713 HOXD11 9606 + 2:176104216-176109754 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249504 HOXD11-001 176107286-176109588 protein_coding
  ENST00000498438 HOXD11-003 176104216-176109754 processed_transcript
  ENST00000619244 HOXD11-201 176107356-176109243 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverOvaryPlacentaTestisENST00000249504ENST00000498438ENST00000619244
Transcript ID Brain Colon Liver Ovary Placenta Testis
ENST00000249504 N/A 1.966±0.00 N/A N/A 1.064±0.00 0.886±0.00
ENST00000498438 N/A N/A N/A 0.681±0.00 0.640±0.00 N/A
ENST00000619244 0.050±0.00 N/A 1.970±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_0001HF CIL_0001HF_0001 CGP 2:176099730-176109754
CIL_00017N CIL_00017N_0001 CGP 2:176104216-176119942

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001656 IEA metanephros development
GO:0001658 ISS branching involved in ureteric bud morphogenesis
GO:0001759 IEA organ induction
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007338 IEA single fertilization
GO:0007389 IEA pattern specification process
GO:0009952 IEA anterior/posterior pattern specification
GO:0009953 ISS dorsal/ventral pattern formation
GO:0009954 IEA proximal/distal pattern formation
GO:0010468 IEA regulation of gene expression
GO:0010720 IEA positive regulation of cell development
GO:0030326 IEA embryonic limb morphogenesis
GO:0032330 IEA regulation of chondrocyte differentiation
GO:0032332 IEA positive regulation of chondrocyte differentiation
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0042733 IEA embryonic digit morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0048589 IEA developmental growth
GO:0060272 IEA embryonic skeletal joint morphogenesis
GO:0060351 IEA cartilage development involved in endochondral bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059267 hoxd11a homeo box D11a protein_coding Danio_rerio
ENSMUSG00000042499 Hoxd11 homeobox D11 protein_coding Mus_musculus

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