C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox D13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128714 HOXD13 9606 + 2:176092891-176095938 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392539 HOXD13-001 176092891-176095938 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLiverOvaryPlacentaTestisENST00000392539
Transcript ID Adipose Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000392539 0.013±0.00 0.006±0.00 0.466±0.40 0.136±0.00 0.677±0.00 0.067±0.08 0.039±0.02 0.225±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_0001H7 CIL_0001H7_0001 CGP 2:176077472-176095938
CIL_0001HG CIL_0001HG_0001 CGP 2:176092891-176101193

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0003677 TAS:IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007275 TAS multicellular organismal development
GO:0007389 IEA pattern specification process
GO:0009952 IEA anterior/posterior pattern specification
GO:0022612 IEA gland morphogenesis
GO:0030326 IEA embryonic limb morphogenesis
GO:0030539 IEA male genitalia development
GO:0035108 IEA limb morphogenesis
GO:0042127 IEA regulation of cell proliferation
GO:0042733 IEA embryonic digit morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048619 IEA embryonic hindgut morphogenesis
GO:0060527 IEA prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis
GO:0060571 IEA morphogenesis of an epithelial fold
GO:0060602 IEA branch elongation of an epithelium
GO:0060687 IEA regulation of branching involved in prostate gland morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059256 hoxd13a homeo box D13a protein_coding Danio_rerio
ENSMUSG00000001819 Hoxd13 homeobox D13 protein_coding Mus_musculus

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