C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 13 homolog C (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129003 VPS13C 9606 - 15:61852389-62060473 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249837 VPS13C-001 61852389-62060473 protein_coding
  ENST00000261517 VPS13C-002 61852393-62060448 protein_coding
  ENST00000395896 VPS13C-003 61864306-62060448 protein_coding
  ENST00000395898 VPS13C-004 61867744-62060448 protein_coding
  ENST00000558088 VPS13C-008 61951860-61961671 processed_transcript
  ENST00000558338 VPS13C-006 61906643-61917532 retained_intron
  ENST00000558919 VPS13C-010 61875787-61881589 processed_transcript
  ENST00000559119 VPS13C-009 61854413-61856793 retained_intron
  ENST00000560637 VPS13C-005 61852404-61864760 retained_intron
  ENST00000561258 VPS13C-007 61983713-61991748 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249837ENST00000395896ENST00000395898ENST00000558919ENST00000560637
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249837 5.348±0.00 1.656±0.00 2.454±0.00 N/A 2.759±0.12 2.251±0.68 2.135±1.36 2.199±0.19 3.252±2.64 3.637±1.82 1.039±0.48 2.256±0.65 0.711±0.34 1.945±0.38
ENST00000395896 N/A N/A 1.364±0.00 4.399±0.15 N/A 0.288±0.00 0.819±0.00 0.893±0.31 N/A N/A 0.371±0.00 1.702±1.64 N/A N/A
ENST00000395898 N/A N/A 3.011±0.00 3.563±0.00 6.329±0.00 N/A 1.709±0.00 N/A 8.190±0.00 N/A 0.997±0.00 7.529±0.00 N/A N/A
ENST00000558919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.716±0.00 9.010±0.00 N/A
ENST00000560637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.239±0.89 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074465 CR388046.3 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000035284 Vps13c vacuolar protein sorting 13C (yeast) protein_coding Mus_musculus

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