C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neuroguidin, EIF4E binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129460 NGDN 9606 + 14:23469688-23509862 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000397154 NGDN-002 23469703-23478823 protein_coding
  ENST00000408901 NGDN-001 23469688-23478193 protein_coding
  ENST00000553336 NGDN-011 23469699-23476054 retained_intron
  ENST00000553439 NGDN-003 23469707-23478804 retained_intron
  ENST00000555128 NGDN-010 23469744-23476108 protein_coding
  ENST00000556022 NGDN-013 23475183-23477538 retained_intron
  ENST00000556103 NGDN-014 23476345-23478036 retained_intron
  ENST00000556378 NGDN-007 23469689-23471609 retained_intron
  ENST00000556483 NGDN-012 23470050-23478074 protein_coding
  ENST00000556580 NGDN-004 23476166-23478178 protein_coding
  ENST00000556699 NGDN-006 23477213-23509862 protein_coding
  ENST00000556953 NGDN-009 23469763-23471180 retained_intron
  ENST00000557097 NGDN-008 23469699-23470282 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397154ENST00000408901ENST00000553439ENST00000556103ENST00000556483ENST00000556580
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397154 N/A N/A 0.603±0.00 N/A N/A N/A N/A N/A N/A 0.687±0.00 N/A N/A N/A N/A
ENST00000408901 5.956±0.00 11.811±0.00 1.278±0.00 8.915±0.44 6.427±0.40 6.824±1.24 3.109±0.33 7.722±4.39 4.818±0.80 5.182±1.43 3.954±1.17 14.640±6.29 9.931±0.61 19.222±4.29
ENST00000553439 N/A N/A N/A N/A 0.676±0.00 N/A N/A N/A N/A 0.638±0.00 N/A 1.170±0.00 N/A N/A
ENST00000556103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.053±0.00 N/A N/A N/A
ENST00000556483 4.754±0.00 9.070±0.00 N/A 11.395±0.00 6.582±0.00 4.341±0.00 4.975±0.00 4.442±0.00 5.641±0.00 10.329±0.00 12.761±0.00 4.445±0.00 3.538±0.54 9.729±0.00
ENST00000556580 N/A N/A N/A N/A N/A N/A N/A 2.547±0.00 N/A N/A N/A 7.766±0.00 5.747±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0001 VISTA 14:23078458-23681621
CIL_0009BW CIL_0009BW_0001 VISTA 14:23137378-23739005
CIL_0008Q4 CIL_0008Q4_0001 VISTA 14:23138150-23738498
CIL_0008QH CIL_0008QH_0001 VISTA 14:23142404-23743714

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006417 IEA regulation of translation
GO:0042995 IEA cell projection
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045372 ngdn neuroguidin, EIF4E binding protein protein_coding Danio_rerio
ENSMUSG00000022204 Ngdn neuroguidin, EIF4E binding protein protein_coding Mus_musculus

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