C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 15, type 1, M-cadherin (myotubule)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129910 CDH15 9606 + 16:89171767-89195492 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000289746 CDH15-001 89171767-89195492 protein_coding
  ENST00000521087 CDH15-002 89171767-89183605 processed_transcript
  ENST00000524089 CDH15-003 89171767-89186192 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000289746ENST00000521087ENST00000524089
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000289746 0.159±0.00 0.016±0.00 0.424±0.00 N/A 0.126±0.00 0.176±0.00 0.070±0.00 20.204±17.68 0.184±0.09 1.655±1.18 0.946±0.12
ENST00000521087 0.174±0.00 0.049±0.00 N/A 0.164±0.00 0.135±0.00 N/A 0.094±0.00 N/A 0.029±0.00 N/A N/A
ENST00000524089 N/A N/A N/A N/A 0.109±0.00 0.060±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091T CIL_00091T_0001 VISTA 16:88690989-89294615
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_0006AI CIL_0006AI_0002 CGP 16:89088375-89195492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005901 IEA caveola
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031594 IEA neuromuscular junction
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0042692 TAS muscle cell differentiation
GO:0045216 TAS cell-cell junction organization
GO:0051149 TAS positive regulation of muscle cell differentiation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068191 cdh15 cadherin 15, M-cadherin (myotubule) protein_coding Danio_rerio
ENSMUSG00000031962 Cdh15 cadherin 15 protein_coding Mus_musculus

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