C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130340 SNX9 9606 + 6:157700387-157945077 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392185 SNX9-001 157823264-157945077 protein_coding
  ENST00000611124 SNX9-201 157867249-157945077 protein_coding
  ENST00000614703 SNX9-002 157700387-157875149 protein_coding
  ENST00000614800 SNX9-003 157716046-157875087 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392185ENST00000611124
Transcript ID Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392185 1.831±0.00 1.089±0.00 1.632±0.00 1.382±0.28 N/A 2.527±0.00 2.390±0.63 N/A 15.568±20.27 11.885±12.52 8.981±0.00
ENST00000611124 0.614±0.00 1.939±0.00 2.106±0.00 N/A 2.806±0.00 6.282±0.00 N/A 1.613±0.00 9.880±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055E CIL_00055E_0001 CGP 6:157381133-157945077
CIL_00055D CIL_00055D_0001 CGP 6:157700387-158099176

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000281 IMP mitotic cytokinesis
GO:0005515 IPI:IEA protein binding
GO:0005545 IDA 1-phosphatidylinositol binding
GO:0005737 IDA cytoplasm
GO:0005768 IBA endosome
GO:0005802 IDA trans-Golgi network
GO:0005886 IDA plasma membrane
GO:0006886 IMP intracellular protein transport
GO:0006897 IMP endocytosis
GO:0006898 IMP receptor-mediated endocytosis
GO:0007067 IEA mitotic nuclear division
GO:0015031 IEA protein transport
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016197 IMP endosomal transport
GO:0030136 IDA clathrin-coated vesicle
GO:0030659 IDA cytoplasmic vesicle membrane
GO:0031234 IDA extrinsic component of cytoplasmic side of plasma membrane
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032461 IDA positive regulation of protein oligomerization
GO:0035091 IEA phosphatidylinositol binding
GO:0036089 IMP cleavage furrow formation
GO:0042803 IPI protein homodimerization activity
GO:0042995 IEA cell projection
GO:0043547 IDA positive regulation of GTPase activity
GO:0051044 IDA positive regulation of membrane protein ectodomain proteolysis
GO:0060988 IDA lipid tube assembly
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000837 snx9a sorting nexin 9a protein_coding Danio_rerio
ENSDARG00000069302 snx9b sorting nexin 9b protein_coding Danio_rerio
ENSMUSG00000002365 Snx9 sorting nexin 9 protein_coding Mus_musculus

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