C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single stranded DNA binding protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130511 SSBP4 9606 + 19:18418864-18434562 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000270061 SSBP4-002 18419355-18434562 protein_coding
  ENST00000348495 SSBP4-001 18419336-18434562 protein_coding
  ENST00000593641 SSBP4-005 18432200-18434562 protein_coding
  ENST00000597724 SSBP4-004 18418864-18432214 protein_coding
  ENST00000598159 SSBP4-016 18419430-18432174 processed_transcript
  ENST00000599699 SSBP4-013 18433275-18434562 protein_coding
  ENST00000600244 SSBP4-011 18431645-18433100 retained_intron
  ENST00000600628 SSBP4-008 18426040-18431862 processed_transcript
  ENST00000601357 SSBP4-006 18419426-18431838 protein_coding
  ENST00000601444 SSBP4-015 18432067-18433652 retained_intron
  ENST00000601614 SSBP4-007 18419624-18431705 nonsense_mediated_decay
  ENST00000601919 SSBP4-012 18431813-18433043 retained_intron
  ENST00000602088 SSBP4-009 18420103-18432579 protein_coding
  ENST00000607020 SSBP4-014 18419606-18432023 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000270061ENST00000348495ENST00000593641ENST00000598159ENST00000599699ENST00000601357ENST00000601444ENST00000602088
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000270061 13.112±0.00 2.965±0.00 12.632±0.00 6.110±0.00 N/A N/A 1.635±1.09 13.756±0.00 5.024±0.00 14.449±13.62
ENST00000348495 N/A 7.801±0.00 N/A N/A 4.008±3.86 N/A 2.826±0.00 N/A 0.550±0.00 N/A
ENST00000593641 N/A 3.325±0.00 1.357±0.00 8.900±0.00 N/A N/A 3.419±0.00 24.357±0.00 6.872±0.00 N/A
ENST00000598159 N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.485±26.29
ENST00000599699 N/A N/A N/A N/A N/A 1.704±0.00 N/A N/A 0.784±0.00 N/A
ENST00000601357 N/A N/A N/A N/A N/A N/A N/A N/A 12.258±0.00 N/A
ENST00000601444 N/A N/A N/A N/A N/A N/A N/A 1.793±0.00 N/A N/A
ENST00000602088 N/A N/A N/A 6.461±4.79 0.410±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056483 ssbp4 single stranded DNA binding protein 4 protein_coding Danio_rerio
ENSDARG00000056490 SSBP4 (2 of 2) single stranded DNA binding protein 4 protein_coding Danio_rerio
ENSMUSG00000070003 Ssbp4 single stranded DNA binding protein 4 protein_coding Mus_musculus

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