C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein, LIM domain interacting
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131263 RLIM 9606 - X:74585217-74614617 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000332687 RLIM-001 74585217-74614617 protein_coding
  ENST00000349225 RLIM-002 74590118-74614617 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000332687ENST00000349225
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000332687 6.448±0.00 4.132±0.00 5.179±0.00 12.359±1.80 4.287±0.27 3.791±0.21 3.250±0.48 4.450±0.56 4.507±2.73 5.325±0.22 2.539±0.53 4.656±1.32 2.390±1.27 3.612±0.41
ENST00000349225 N/A N/A N/A N/A 2.304±0.00 3.181±0.00 N/A 1.011±0.00 2.161±0.00 1.953±0.00 N/A 3.038±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S9 CIL_0006S9_0001 CGP X:74421461-74614617
CIL_0006S6 CIL_0006S6_0001 CGP X:74585217-74925485

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 NAS transcription corepressor activity
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0017053 NAS transcriptional repressor complex
GO:0043433 IEA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0045892 NAS negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0060816 IDA random inactivation of X chromosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079306 RLIM ring finger protein, LIM domain interacting protein_coding Danio_rerio
ENSMUSG00000056537 Rlim ring finger protein, LIM domain interacting protein_coding Mus_musculus

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