C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: raftlin, lipid raft linker 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131378 RFTN1 9606 - 3:16313574-16514026 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334133 RFTN1-001 16315856-16513706 protein_coding
  ENST00000431547 RFTN1-005 16409473-16514026 protein_coding
  ENST00000432519 RFTN1-002 16315845-16482865 protein_coding
  ENST00000441460 RFTN1-007 16378095-16512922 protein_coding
  ENST00000449415 RFTN1-008 16378095-16512904 protein_coding
  ENST00000451036 RFTN1-006 16377719-16513374 protein_coding
  ENST00000453536 RFTN1-009 16409428-16513522 nonsense_mediated_decay
  ENST00000470458 RFTN1-010 16378072-16472599 processed_transcript
  ENST00000483671 RFTN1-003 16316530-16370966 processed_transcript
  ENST00000484752 RFTN1-004 16378053-16484835 processed_transcript
  ENST00000495666 RFTN1-011 16377893-16434770 processed_transcript
  ENST00000607320 RFTN1-012 16313574-16326867 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334133ENST00000432519ENST00000451036ENST00000483671ENST00000495666
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334133 18.985±0.00 26.840±0.00 4.669±1.19 16.584±12.00 7.895±7.02 5.608±5.14 8.214±0.00 4.271±1.64 15.188±11.29 1.374±1.10 12.367±10.27 24.567±10.00 6.241±4.75
ENST00000432519 N/A 4.587±0.00 0.979±0.00 4.513±3.15 N/A N/A 2.403±0.00 3.465±0.00 N/A 1.798±0.00 8.200±1.46 N/A N/A
ENST00000451036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.773±0.00 N/A N/A
ENST00000483671 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.249±0.00 1.201±0.00 N/A N/A
ENST00000495666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.425±0.00 19.725±0.00 7.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HO CIL_0004HO_0001 CGP 3:16257978-16350299
CIL_0002VD CIL_0002VD_0002 CGP 3:16265199-16514026
CIL_0002VC CIL_0002VC_0002 CGP 3:16313574-16670306

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001765 IMP membrane raft assembly
GO:0002457 ISS T cell antigen processing and presentation
GO:0003725 IDA double-stranded RNA binding
GO:0005737 IDA cytoplasm
GO:0005768 IDA endosome
GO:0005886 IDA plasma membrane
GO:0032596 ISS protein transport into membrane raft
GO:0032620 ISS interleukin-17 production
GO:0033227 IMP dsRNA transport
GO:0034138 IMP toll-like receptor 3 signaling pathway
GO:0040007 IMP growth
GO:0043234 IDA protein complex
GO:0043330 IMP response to exogenous dsRNA
GO:0045121 IDA membrane raft
GO:0050852 ISS T cell receptor signaling pathway
GO:0050853 IMP B cell receptor signaling pathway
GO:0070062 IDA extracellular vesicular exosome
GO:1903044 ISS protein localization to membrane raft

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070831 rftn1a raftlin, lipid raft linker 1a protein_coding Danio_rerio
ENSDARG00000086499 RFTN1 (2 of 2) raftlin, lipid raft linker 1 protein_coding Danio_rerio
ENSMUSG00000039316 Rftn1 raftlin lipid raft linker 1 protein_coding Mus_musculus

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