C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, FYVE domain containing 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131381 ZFYVE20 9606 - 3:15070073-15099163 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000253699 ZFYVE20-001 15070073-15099148 protein_coding
  ENST00000426541 ZFYVE20-008 15074905-15082440 nonsense_mediated_decay
  ENST00000441057 ZFYVE20-006 15084735-15099133 nonsense_mediated_decay
  ENST00000449050 ZFYVE20-005 15095671-15099143 protein_coding
  ENST00000449964 ZFYVE20-004 15078157-15099148 processed_transcript
  ENST00000463214 ZFYVE20-007 15082478-15086112 retained_intron
  ENST00000476527 ZFYVE20-002 15073605-15099163 protein_coding
  ENST00000483098 ZFYVE20-009 15078110-15081560 processed_transcript
  ENST00000507357 ZFYVE20-010 15095998-15099136 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000253699ENST00000426541ENST00000476527
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000253699 2.087±0.00 0.801±0.00 4.032±3.03 1.070±0.28 1.831±0.00 2.499±1.53 0.809±0.26 1.745±0.51 0.947±0.03 1.179±0.00 1.923±0.86 0.726±0.10
ENST00000426541 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.737±0.00 3.006±0.00 N/A
ENST00000476527 N/A N/A N/A 1.368±0.00 N/A 0.773±0.00 N/A 2.299±0.00 2.074±0.00 0.545±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AI CIL_0005AI_0001 CGP 3:15042460-15099163

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 NAS endosome
GO:0005886 IEA plasma membrane
GO:0007596 TAS blood coagulation
GO:0008270 NAS zinc ion binding
GO:0010008 TAS endosome membrane
GO:0015031 IEA protein transport
GO:0016197 NAS endosomal transport
GO:0017137 IEA Rab GTPase binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078215 zfyve20 zinc finger, FYVE domain containing 20 protein_coding Danio_rerio
ENSMUSG00000014550 Zfyve20 zinc finger, FYVE domain containing 20 protein_coding Mus_musculus

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