C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, CCHC domain containing 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131732 ZCCHC9 9606 + 5:81301590-81313297 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254037 ZCCHC9-001 81301603-81313297 protein_coding
  ENST00000380199 ZCCHC9-003 81301624-81313154 protein_coding
  ENST00000407610 ZCCHC9-002 81301612-81313297 protein_coding
  ENST00000438268 ZCCHC9-004 81301641-81312662 protein_coding
  ENST00000504502 ZCCHC9-007 81301662-81309158 retained_intron
  ENST00000505860 ZCCHC9-009 81308407-81312614 retained_intron
  ENST00000506458 ZCCHC9-005 81301623-81312972 processed_transcript
  ENST00000507402 ZCCHC9-006 81301590-81312917 processed_transcript
  ENST00000510227 ZCCHC9-008 81308668-81312973 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254037ENST00000380199ENST00000407610ENST00000438268ENST00000506458ENST00000507402
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254037 0.219±0.00 0.653±0.00 N/A 0.364±0.00 0.327±0.00 0.337±0.00 0.185±0.04 0.480±0.00 0.345±0.00 0.184±0.00 N/A 0.544±0.18 N/A 1.678±0.00
ENST00000380199 2.328±0.00 2.515±0.00 N/A 1.917±0.00 1.930±1.27 2.887±2.43 0.859±0.43 2.095±1.51 2.928±2.02 2.685±0.00 1.026±0.00 7.231±0.59 3.623±1.53 3.367±0.00
ENST00000407610 N/A N/A 0.195±0.00 0.491±0.00 0.411±0.00 1.139±0.00 N/A 0.756±0.00 0.560±0.00 1.114±0.00 0.505±0.07 2.206±0.90 1.298±0.00 N/A
ENST00000438268 1.093±0.00 2.124±0.00 N/A N/A N/A N/A 0.579±0.00 2.908±0.00 N/A N/A N/A 6.069±0.00 6.626±0.00 6.074±1.44
ENST00000506458 N/A N/A N/A N/A 2.411±0.00 N/A 0.651±0.00 3.768±0.00 3.702±0.00 N/A N/A N/A 2.791±0.49 N/A
ENST00000507402 1.875±0.00 4.323±0.00 N/A 1.854±0.00 2.109±1.28 4.086±0.00 1.065±0.00 3.057±0.00 N/A 1.995±0.00 2.471±1.75 7.587±0.00 2.531±0.00 6.741±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TI CIL_0005TI_0002 CGP 5:81301590-81394179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0008270 IEA zinc ion binding
GO:0010923 IDA negative regulation of phosphatase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007531 zcchc9 zinc finger, CCHC domain containing 9 protein_coding Danio_rerio
ENSMUSG00000021621 Zcchc9 zinc finger, CCHC domain containing 9 protein_coding Mus_musculus

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