C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 47
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132481 TRIM47 9606 - 17:75874161-75878575 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254816 TRIM47-001 75874161-75878575 protein_coding
  ENST00000585333 TRIM47-007 75874164-75874892 protein_coding
  ENST00000586495 TRIM47-004 75876435-75877264 protein_coding
  ENST00000587339 TRIM47-002 75874164-75878196 protein_coding
  ENST00000587774 TRIM47-003 75876434-75878213 retained_intron
  ENST00000592942 TRIM47-006 75874523-75875591 retained_intron
  ENST00000593089 TRIM47-005 75875841-75876394 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254816ENST00000585333ENST00000587339ENST00000592942ENST00000593089
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254816 N/A N/A N/A 0.679±0.00 0.880±0.00 N/A 1.714±0.00 0.620±0.00 2.014±0.00 N/A 1.146±0.00 5.352±0.00 1.128±0.63 N/A
ENST00000585333 4.267±0.00 26.184±0.00 0.391±0.00 1.151±0.00 7.935±0.00 16.857±0.00 N/A 10.461±0.00 N/A N/A 2.486±0.00 0.822±0.00 N/A 12.842±0.00
ENST00000587339 6.477±0.00 20.869±0.00 0.484±0.00 6.469±6.29 7.976±0.00 7.790±7.65 3.055±2.90 10.817±0.00 3.165±0.00 17.885±0.00 4.446±0.00 19.059±2.52 6.289±3.54 6.626±4.91
ENST00000592942 N/A 10.631±0.00 N/A N/A 1.662±0.00 0.794±0.00 N/A 3.597±2.30 N/A 0.690±0.00 3.111±0.00 3.386±2.18 2.136±0.00 N/A
ENST00000593089 N/A N/A N/A N/A N/A N/A 0.376±0.00 N/A N/A 1.422±0.00 N/A 0.941±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_00078U CIL_00078U_0001 CGP 17:75845699-75878575
CIL_00078V CIL_00078V_0001 CGP 17:75874161-75897003

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003909 ftr01 finTRIM family, member 1 protein_coding Danio_rerio
ENSDARG00000005327 ftr66 finTRIM family, member 66 protein_coding Danio_rerio
ENSDARG00000008396 ftr24 finTRIM family, member 24 protein_coding Danio_rerio
ENSDARG00000009161 ftr55 finTRIM family, member 55 protein_coding Danio_rerio
ENSDARG00000018506 ftr03 finTRIM family, member 3 protein_coding Danio_rerio
ENSDARG00000020863 trim25l tripartite motif-containing 25-like protein_coding Danio_rerio
ENSDARG00000023597 ftr64 finTRIM family, member 64 protein_coding Danio_rerio
ENSDARG00000025403 ftr83 finTRIM family, member 83 protein_coding Danio_rerio
ENSDARG00000026704 ftr72 finTRIM family, member 72 protein_coding Danio_rerio
ENSDARG00000029105 ftr51 finTRIM family, member 51 protein_coding Danio_rerio
ENSDARG00000030954 ftr56 finTRIM family, member 56 protein_coding Danio_rerio
ENSDARG00000031565 ftr67 finTRIM family, member 67 protein_coding Danio_rerio
ENSDARG00000032043 ftr16 finTRIM family, member 16 protein_coding Danio_rerio
ENSDARG00000034707 TRIM47 (15 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000035339 TRIM47 (16 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000037190 TRIM47 (17 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000038646 ftr11 finTRIM family, member 11 protein_coding Danio_rerio
ENSDARG00000038747 TRIM47 (19 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000039852 TRIM47 (20 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000040536 TRIM47 (21 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000041220 ftr53 finTRIM family, member 53 protein_coding Danio_rerio
ENSDARG00000043850 ftr54 finTRIM family, member 54 protein_coding Danio_rerio
ENSDARG00000052564 ftr42 finTRIM family, member 42 protein_coding Danio_rerio
ENSDARG00000052955 ftr19 finTRIM family, member 19 protein_coding Danio_rerio
ENSDARG00000052971 ftr19 finTRIM family, member 19 protein_coding Danio_rerio
ENSDARG00000053293 ftr14 finTRIM family, member 14 protein_coding Danio_rerio
ENSDARG00000053366 ftr12 finTRIM family, member 12 protein_coding Danio_rerio
ENSDARG00000053450 ftr06 finTRIM family, member 6 protein_coding Danio_rerio
ENSDARG00000054153 ftr50 finTRIM family, member 50 protein_coding Danio_rerio
ENSDARG00000055436 TRIM47 (33 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000055476 CR352329.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000055520 ftr61 finTRIM family, member 61 protein_coding Danio_rerio
ENSDARG00000055647 ftr82 finTRIM family, member 82 protein_coding Danio_rerio
ENSDARG00000067661 TRIM47 (37 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000067872 TRIM47 (38 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000067985 ftr23 finTRIM family, member 23 protein_coding Danio_rerio
ENSDARG00000067986 TRIM47 (40 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000069508 ftr46 finTRIM family, member 46 protein_coding Danio_rerio
ENSDARG00000069512 CABZ01034857.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000069514 TRIM47 (43 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000070943 TRIM47 (44 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000071238 ftr58 finTRIM family, member 58 protein_coding Danio_rerio
ENSDARG00000073735 TRIM47 (46 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000073880 ftr41 finTRIM family, member 41 protein_coding Danio_rerio
ENSDARG00000074118 ftr15 finTRIM family, member 15 protein_coding Danio_rerio
ENSDARG00000074360 ftr57 finTRIM family, member 57 protein_coding Danio_rerio
ENSDARG00000074884 CABZ01034858.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000075355 ftr35 finTRIM family, member 35 protein_coding Danio_rerio
ENSDARG00000076093 ftr76 finTRIM family, member 76 protein_coding Danio_rerio
ENSDARG00000076106 ftr43 finTRIM family, member 43 protein_coding Danio_rerio
ENSDARG00000076839 TRIM47 (55 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000076969 ftr22 finTRIM family, member 22 protein_coding Danio_rerio
ENSDARG00000077412 ftr08 finTRIM family, member 8 protein_coding Danio_rerio
ENSDARG00000078065 TRIM47 (58 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000078254 ftr14l finTRIM family, member 14-like protein_coding Danio_rerio
ENSDARG00000078446 ftr07 finTRIM family, member 7 protein_coding Danio_rerio
ENSDARG00000079412 ftr02 finTRIM family, member 2 protein_coding Danio_rerio
ENSDARG00000079537 ftr13 finTRIM family, member 13 protein_coding Danio_rerio
ENSDARG00000079614 ftr38 finTRIM family, member 38 protein_coding Danio_rerio
ENSDARG00000079913 TRIM47 (64 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000087057 ftr34 finTRIM family, member 34 protein_coding Danio_rerio
ENSDARG00000087711 TRIM47 (67 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000088280 ftr28l finTRIM family, member 28-like protein_coding Danio_rerio
ENSDARG00000089388 ftr37 finTRIM family, member 37 protein_coding Danio_rerio
ENSDARG00000090431 ftr65 finTRIM family, member 65 protein_coding Danio_rerio
ENSDARG00000092023 ftr10 finTRIM family, member 10 protein_coding Danio_rerio
ENSDARG00000092745 ftr29 finTRIM family, member 29 protein_coding Danio_rerio
ENSDARG00000092961 ftr26 finTRIM family, member 26 protein_coding Danio_rerio
ENSDARG00000093203 ftr32 finTRIM family, member 32 protein_coding Danio_rerio
ENSDARG00000093263 TRIM47 (75 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000093651 ftr26 finTRIM family, member 26 protein_coding Danio_rerio
ENSDARG00000093932 ftr04 finTRIM family, member 4 protein_coding Danio_rerio
ENSDARG00000093972 ftr79 finTRIM family, member 79 protein_coding Danio_rerio
ENSDARG00000094131 ftr27 finTRIM family, member 27 protein_coding Danio_rerio
ENSDARG00000095032 ftr33 finTRIM family, member 33 protein_coding Danio_rerio
ENSDARG00000095083 ftr05 finTRIM family, member 5 protein_coding Danio_rerio
ENSDARG00000095298 ftr73 finTRIM family, member 73 protein_coding Danio_rerio
ENSDARG00000095345 ftr09 finTRIM family, member 9 protein_coding Danio_rerio
ENSDARG00000095448 ftr30 finTRIM family, member 30 protein_coding Danio_rerio
ENSDARG00000095678 ftr36 finTRIM family, member 36 protein_coding Danio_rerio
ENSDARG00000095825 tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000095864 ftr59 finTRIM family, member 59 protein_coding Danio_rerio
ENSDARG00000097373 TRIM47 (87 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000097464 TRIM47 (88 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000097679 TRIM47 (89 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000098004 TRIM47 (90 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSMUSG00000020773 Trim47 tripartite motif-containing 47 protein_coding Mus_musculus

Loading