C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rh family, B glycoprotein (gene/pseudogene)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132677 RHBG 9606 + 1:156369212-156385219 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000451864 RHBG-006 156369212-156385148 nonsense_mediated_decay
  ENST00000467375 RHBG-005 156369212-156371879 retained_intron
  ENST00000494874 RHBG-008 156382143-156384884 processed_transcript
  ENST00000537040 RHBG-001 156369212-156385219 protein_coding
  ENST00000612897 RHBG-003 156369212-156385219 nonsense_mediated_decay
  ENST00000613460 RHBG-002 156369212-156385219 nonsense_mediated_decay
  ENST00000618120 RHBG-004 156369240-156385213 retained_intron
  ENST00000620376 RHBG-009 156369251-156385219 nonsense_mediated_decay
  ENST00000622297 RHBG-007 156382313-156384603 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000451864ENST00000467375ENST00000494874ENST00000537040ENST00000612897ENST00000613460ENST00000618120ENST00000622297
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000451864 0.088±0.00 0.120±0.00 N/A N/A 0.150±0.00 0.159±0.00 0.013±0.00 N/A 0.093±0.00 0.078±0.00 N/A N/A 0.227±0.13
ENST00000467375 0.255±0.00 0.485±0.00 1.533±0.00 0.128±0.00 0.400±0.00 0.129±0.00 0.143±0.00 N/A 0.076±0.00 0.100±0.00 0.019±0.00 0.416±0.20 0.266±0.08
ENST00000494874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.379±0.00 N/A
ENST00000537040 N/A N/A N/A N/A N/A N/A N/A 2.275±1.99 N/A N/A N/A 2.830±0.00 0.213±0.00
ENST00000612897 N/A N/A N/A N/A N/A N/A N/A 3.398±0.00 N/A N/A N/A N/A N/A
ENST00000613460 N/A N/A N/A 0.322±0.00 N/A N/A N/A 3.888±0.00 0.171±0.00 N/A N/A 0.107±0.00 0.252±0.00
ENST00000618120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.914±0.85 0.205±0.00
ENST00000622297 N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A N/A N/A 0.330±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0008519 ISS:IEA ammonium transmembrane transporter activity
GO:0014731 IMP spectrin-associated cytoskeleton
GO:0015696 ISS:IEA ammonium transport
GO:0016020 IEA membrane
GO:0016323 ISS basolateral plasma membrane
GO:0030506 IPI ankyrin binding
GO:0031410 IEA cytoplasmic vesicle
GO:0046658 IMP anchored component of plasma membrane
GO:0055085 TAS transmembrane transport
GO:0070634 IDA transepithelial ammonium transport
GO:0072488 IEA ammonium transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009018 rhbg Rhesus blood group, B glycoprotein protein_coding Danio_rerio

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