C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 38
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132819 RBM38 9606 + 20:57391407-57409333 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342690 RBM38-005 57391453-57407776 nonsense_mediated_decay
  ENST00000344785 RBM38-003 57391637-57409333 nonsense_mediated_decay
  ENST00000356208 RBM38-001 57391407-57409333 protein_coding
  ENST00000371219 RBM38-002 57392230-57407860 protein_coding
  ENST00000440234 RBM38-004 57391428-57407713 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342690ENST00000344785ENST00000356208ENST00000440234
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342690 N/A N/A N/A 0.900±0.00 1.172±0.00 1.468±0.00 N/A N/A N/A 7.245±0.00 N/A N/A N/A
ENST00000344785 N/A N/A N/A N/A N/A N/A 0.526±0.00 N/A N/A N/A N/A 2.230±0.00 N/A
ENST00000356208 6.658±0.00 25.783±0.00 2.770±2.21 6.833±5.01 18.553±16.49 13.953±12.40 7.924±0.00 2.665±0.19 9.825±9.08 57.973±44.15 28.446±19.48 13.755±1.82 31.374±1.17
ENST00000440234 N/A N/A N/A N/A N/A N/A N/A N/A 0.491±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0001 VISTA 20:56856738-57458908
CIL_0008TD CIL_0008TD_0001 VISTA 20:56859467-57462541
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_00030G CIL_00030G_0001 CGP 20:57391407-57525652

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003729 IDA mRNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006397 IEA mRNA processing
GO:0006977 IDA DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0006978 IDA DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0007049 IEA cell cycle
GO:0007050 IDA cell cycle arrest
GO:0008285 IDA negative regulation of cell proliferation
GO:0008380 IEA RNA splicing
GO:0010830 IEA regulation of myotube differentiation
GO:0030154 IEA cell differentiation
GO:0043484 IDA regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0070935 IDA 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058818 rbm38 RNA binding motif protein 38 protein_coding Danio_rerio
ENSMUSG00000027510 Rbm38 RNA binding motif protein 38 protein_coding Mus_musculus

Loading