C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: adaptor-related protein complex 3, beta 1 subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132842 AP3B1 9606 - 5:78000525-78294755 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000255194 AP3B1-001 78000525-78294755 protein_coding
  ENST00000517561 AP3B1-004 78121722-78141170 processed_transcript
  ENST00000517940 AP3B1-009 78088981-78116187 retained_intron
  ENST00000519295 AP3B1-002 78002326-78294692 protein_coding
  ENST00000519888 AP3B1-005 78087496-78113770 processed_transcript
  ENST00000520122 AP3B1-008 78002995-78015873 retained_intron
  ENST00000522901 AP3B1-007 78002338-78039150 protein_coding
  ENST00000523204 AP3B1-006 78020708-78043250 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000255194ENST00000517940ENST00000519295ENST00000519888ENST00000522901
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000255194 N/A 0.503±0.00 N/A N/A N/A N/A 0.295±0.00 N/A 0.541±0.31 N/A N/A N/A N/A N/A
ENST00000517940 N/A N/A N/A N/A N/A N/A N/A 2.099±0.00 N/A N/A N/A 4.171±0.00 N/A 4.514±0.00
ENST00000519295 10.931±0.00 5.054±0.00 3.995±0.00 3.342±0.77 5.141±1.90 6.256±1.66 3.134±1.62 6.777±4.00 2.401±0.34 2.910±0.35 1.591±1.15 5.078±1.70 10.379±3.73 6.250±0.76
ENST00000519888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.783±0.00 N/A N/A N/A
ENST00000522901 N/A 2.816±0.00 N/A N/A N/A N/A N/A 6.429±0.00 3.157±0.00 3.613±0.00 1.778±0.00 5.560±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DK CIL_0008DK_0001 VISTA 5:77424780-78026683
CIL_00091B CIL_00091B_0001 VISTA 5:77543897-78144918
CIL_0007SL CIL_0007SL_0001 VISTA 5:77545919-78149307
CIL_00091C CIL_00091C_0001 VISTA 5:77551756-78152775
CIL_00091D CIL_00091D_0001 VISTA 5:77671560-78273382
CIL_0007OX CIL_0007OX_0002 UCNEbase 5:77741346-78218792

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005765 IDA lysosomal membrane
GO:0005794 IEA Golgi apparatus
GO:0006622 IEA protein targeting to lysosome
GO:0006886 TAS:IEA intracellular protein transport
GO:0007596 IEA blood coagulation
GO:0008089 ISS anterograde axon cargo transport
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019882 IEA antigen processing and presentation
GO:0019903 IPI protein phosphatase binding
GO:0030117 IEA membrane coat
GO:0030123 IEA AP-3 adaptor complex
GO:0030742 IPI GTP-dependent protein binding
GO:0031410 IEA cytoplasmic vesicle
GO:0032438 IMP melanosome organization
GO:0048007 IEA antigen processing and presentation, exogenous lipid antigen via MHC class Ib
GO:0048490 ISS anterograde synaptic vesicle transport
GO:0051138 IEA positive regulation of NK T cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086124 AP3B1 (1 of 2) adaptor-related protein complex 3, beta 1 subunit protein_coding Danio_rerio
ENSDARG00000089282 CU929160.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000021686 Ap3b1 adaptor-related protein complex 3, beta 1 subunit protein_coding Mus_musculus

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