C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: makorin ring finger protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133606 MKRN1 9606 - 7:140453040-140479569 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000255977 MKRN1-001 140453040-140479569 protein_coding
  ENST00000443720 MKRN1-002 140456192-140479499 protein_coding
  ENST00000463142 MKRN1-018 140454464-140455911 protein_coding
  ENST00000467513 MKRN1-013 140459091-140478656 protein_coding
  ENST00000468447 MKRN1-017 140454665-140456919 retained_intron
  ENST00000471104 MKRN1-011 140459007-140479066 protein_coding
  ENST00000473444 MKRN1-012 140459798-140479037 protein_coding
  ENST00000474576 MKRN1-007 140454268-140478984 protein_coding
  ENST00000475010 MKRN1-006 140453047-140479336 retained_intron
  ENST00000475180 MKRN1-016 140459841-140479182 nonsense_mediated_decay
  ENST00000480552 MKRN1-015 140456180-140478926 protein_coding
  ENST00000481705 MKRN1-009 140459929-140479536 processed_transcript
  ENST00000494939 MKRN1-014 140459178-140478503 protein_coding
  ENST00000495305 MKRN1-003 140454143-140479368 nonsense_mediated_decay
  ENST00000496169 MKRN1-005 140456186-140479355 nonsense_mediated_decay
  ENST00000498535 MKRN1-010 140459772-140479354 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000255977ENST00000443720ENST00000463142ENST00000468447ENST00000471104ENST00000474576ENST00000475010
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000255977 18.798±0.00 9.006±0.00 7.382±6.16 8.221±3.12 10.172±5.29 6.664±4.24 9.179±5.27 3.441±1.45 N/A 7.763±6.43 12.540±7.50 9.866±6.13 38.935±14.24
ENST00000443720 N/A N/A 15.164±6.06 N/A N/A 2.871±0.00 N/A 3.871±0.00 12.005±5.97 13.087±0.00 N/A 6.818±1.19 N/A
ENST00000463142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.235±0.00 23.902±0.00 107.662±0.00
ENST00000468447 N/A N/A N/A N/A N/A N/A N/A 9.418±0.00 N/A N/A N/A N/A N/A
ENST00000471104 N/A N/A N/A N/A N/A N/A 3.943±0.00 N/A N/A 2.234±0.00 N/A N/A N/A
ENST00000474576 N/A N/A N/A N/A N/A 8.256±0.00 N/A N/A N/A 0.664±0.00 N/A N/A N/A
ENST00000475010 N/A 4.336±0.00 N/A N/A N/A N/A 1.183±0.00 N/A 1.860±0.00 N/A 2.362±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZU CIL_0008ZU_0001 VISTA 7:139910788-140514447
CIL_000305 CIL_000305_0001 CGP 7:140404043-140479569

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0003682 IEA chromatin binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005575 ND cellular_component
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041665 mkrn1 makorin, ring finger protein, 1 protein_coding Danio_rerio
ENSMUSG00000029922 Mkrn1 makorin, ring finger protein, 1 protein_coding Mus_musculus

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