C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 12 open reading frame 29
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133641 C12orf29 9606 + 12:88033846-88050160 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356891 C12orf29-001 88035446-88050160 protein_coding
  ENST00000453037 C12orf29-010 88035562-88046949 nonsense_mediated_decay
  ENST00000547468 C12orf29-008 88041708-88048423 retained_intron
  ENST00000548511 C12orf29-002 88035752-88048457 retained_intron
  ENST00000548757 C12orf29-006 88033846-88046976 processed_transcript
  ENST00000549345 C12orf29-007 88034132-88045602 processed_transcript
  ENST00000550333 C12orf29-003 88035505-88050158 nonsense_mediated_decay
  ENST00000552121 C12orf29-004 88035536-88049225 nonsense_mediated_decay
  ENST00000552803 C12orf29-009 88035610-88043838 retained_intron
  ENST00000552847 C12orf29-005 88035538-88045787 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356891ENST00000453037ENST00000550333ENST00000552121
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356891 1.150±0.00 3.451±0.40 1.891±0.00 2.698±0.00 1.399±0.00 1.616±0.00 1.869±0.94 1.105±0.00 1.042±0.00 2.528±0.39 0.821±0.17 3.103±0.00
ENST00000453037 2.773±0.00 N/A N/A N/A 3.514±0.00 N/A 2.405±0.00 6.459±0.00 N/A N/A N/A N/A
ENST00000550333 N/A 2.680±0.00 N/A 1.838±0.00 N/A 2.367±0.65 0.657±0.00 1.208±0.00 0.403±0.00 N/A 0.424±0.00 N/A
ENST00000552121 N/A N/A N/A N/A N/A 2.405±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000215 CIL_000215_0002 CGP 12:88033846-88142216

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IEA hematopoietic progenitor cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045785 C25H12orf29 chromosome 12 open reading frame 29 protein_coding Danio_rerio
ENSMUSG00000046567 4930430F08Rik RIKEN cDNA 4930430F08 gene protein_coding Mus_musculus

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