C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CBP80/20-dependent translation initiation factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134030 CTIF 9606 + 18:48539046-48863217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000256413 CTIF-001 48539046-48863217 protein_coding
  ENST00000382998 CTIF-003 48539158-48861906 protein_coding
  ENST00000587752 CTIF-005 48539988-48711695 protein_coding
  ENST00000587769 CTIF-010 48692512-48758229 processed_transcript
  ENST00000587860 CTIF-002 48760182-48860565 retained_intron
  ENST00000588345 CTIF-006 48540095-48663812 protein_coding
  ENST00000589585 CTIF-008 48621444-48711657 processed_transcript
  ENST00000590422 CTIF-011 48862544-48863208 processed_transcript
  ENST00000591387 CTIF-004 48539415-48664534 protein_coding
  ENST00000591412 CTIF-007 48539210-48663811 protein_coding
  ENST00000592658 CTIF-012 48859882-48862355 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256413ENST00000382998ENST00000587752ENST00000587769ENST00000587860ENST00000589585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256413 N/A N/A 0.271±0.00 19.123±0.00 7.746±0.00 7.348±0.00 1.278±0.92 N/A 2.523±1.23 1.473±1.25 4.215±0.00 11.736±6.98 5.606±1.03 2.956±0.00
ENST00000382998 7.302±0.00 2.361±0.00 N/A 6.057±4.99 14.312±0.00 2.884±0.00 3.438±0.00 4.737±0.00 1.373±0.00 N/A 4.085±0.00 7.467±5.48 3.162±1.86 3.949±0.07
ENST00000587752 N/A N/A 2.529±0.00 N/A 3.597±0.00 N/A N/A N/A 6.551±0.00 N/A N/A 4.184±0.00 N/A N/A
ENST00000587769 N/A N/A 2.424±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587860 N/A N/A 0.679±0.00 N/A 0.806±0.00 N/A 0.279±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000589585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.315±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P6 CIL_0008P6_0001 VISTA 18:48477632-49083007
CIL_0007UR CIL_0007UR_0001 VISTA 18:48480781-49082143
CIL_0000B3 CIL_0000B3_0002 CGP 18:48539046-48950711

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IMP nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0006446 IMP regulation of translational initiation
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090617 CTIF CBP80/20-dependent translation initiation factor protein_coding Danio_rerio
ENSMUSG00000052928 Ctif CBP80/20-dependent translation initiation factor protein_coding Mus_musculus

Loading