C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 30
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135093 USP30 9606 + 12:109023089-109088026 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257548 USP30-001 109052586-109088026 protein_coding
  ENST00000377883 USP30-004 109052604-109082917 nonsense_mediated_decay
  ENST00000392784 USP30-002 109023089-109086377 protein_coding
  ENST00000467307 USP30-007 109067594-109081628 retained_intron
  ENST00000470117 USP30-006 109085063-109086324 nonsense_mediated_decay
  ENST00000479219 USP30-003 109082536-109088023 retained_intron
  ENST00000491362 USP30-005 109082695-109085922 retained_intron
  ENST00000536393 USP30-008 109052642-109072347 protein_coding
  ENST00000536723 USP30-010 109052591-109072350 protein_coding
  ENST00000539121 USP30-009 109052896-109058096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257548ENST00000377883ENST00000392784ENST00000467307ENST00000479219
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257548 3.831±0.00 0.827±0.00 N/A 4.640±2.58 2.114±1.59 1.143±0.13 1.640±0.63 3.363±0.20 1.426±0.59 0.749±0.17 2.270±1.74 2.767±2.12 2.242±0.36 3.352±0.02
ENST00000377883 N/A N/A N/A 2.019±0.00 1.052±0.00 N/A N/A N/A N/A N/A N/A 3.178±0.00 1.675±0.00 10.982±0.00
ENST00000392784 N/A 0.648±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.709±0.00
ENST00000467307 N/A N/A N/A N/A N/A N/A N/A N/A 3.951±0.00 N/A N/A N/A N/A N/A
ENST00000479219 N/A 1.312±0.00 1.123±0.00 N/A 0.466±0.00 0.350±0.03 0.711±0.00 1.525±0.00 1.145±0.47 1.042±0.33 N/A 0.746±0.35 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VR CIL_0001VR_0001 CGP 12:108907741-109088026
CIL_0001VU CIL_0001VU_0001 CGP 12:109023089-109093631

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000422 IMP mitochondrion degradation
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005739 ISS mitochondrion
GO:0005741 IDA mitochondrial outer membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008053 ISS mitochondrial fusion
GO:0008234 IEA cysteine-type peptidase activity
GO:0016021 IEA integral component of membrane
GO:0016579 IDA protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056842 usp30 ubiquitin specific peptidase 30 protein_coding Danio_rerio
ENSDARG00000086976 USP30 (2 of 3) ubiquitin specific peptidase 30 protein_coding Danio_rerio
ENSDARG00000088037 USP30 (3 of 3) ubiquitin specific peptidase 30 protein_coding Danio_rerio
ENSMUSG00000029592 Usp30 ubiquitin specific peptidase 30 protein_coding Mus_musculus

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