C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: musashi RNA-binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135097 MSI1 9606 - 12:120341330-120369180 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257552 MSI1-001 120341330-120369180 protein_coding
  ENST00000546622 MSI1-003 120353323-120361508 processed_transcript
  ENST00000546985 MSI1-002 120346222-120368069 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000257552ENST00000546622ENST00000546985
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000257552 0.101±0.00 0.150±0.00 1.218±1.01 0.382±0.00 0.432±0.31 0.319±0.24 0.117±0.09 0.056±0.00 N/A 1.780±1.93 0.212±0.02 1.832±0.82
ENST00000546622 N/A 0.276±0.00 N/A 0.556±0.00 N/A N/A N/A N/A 0.620±0.00 0.212±0.00 N/A 15.286±0.00
ENST00000546985 N/A 0.156±0.00 1.188±1.03 N/A 0.289±0.00 0.100±0.00 N/A 0.072±0.00 0.075±0.00 0.157±0.00 0.120±0.00 6.278±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0003727 IEA single-stranded RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005844 IEA polysome
GO:0007399 TAS nervous system development
GO:0008266 IEA poly(U) RNA binding
GO:0009725 IEA response to hormone
GO:0030855 IEA epithelial cell differentiation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010710 msi1 musashi homolog 1 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000054256 Msi1 musashi RNA-binding protein 1 protein_coding Mus_musculus

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