C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein A1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135486 HNRNPA1 9606 + 12:54280193-54287088 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330752 HNRNPA1-023 54280775-54284881 protein_coding
  ENST00000340913 HNRNPA1-002 54280755-54285214 protein_coding
  ENST00000546500 HNRNPA1-001 54280193-54287087 protein_coding
  ENST00000547276 HNRNPA1-012 54280780-54285251 protein_coding
  ENST00000547566 HNRNPA1-006 54280748-54287088 nonsense_mediated_decay
  ENST00000547708 HNRNPA1-015 54280748-54283878 protein_coding
  ENST00000547870 HNRNPA1-016 54280749-54282472 retained_intron
  ENST00000548688 HNRNPA1-013 54281006-54282626 protein_coding
  ENST00000550482 HNRNPA1-018 54282198-54284569 protein_coding
  ENST00000550994 HNRNPA1-014 54281186-54282284 protein_coding
  ENST00000551665 HNRNPA1-021 54285907-54287051 retained_intron
  ENST00000551679 HNRNPA1-020 54283723-54284371 retained_intron
  ENST00000551702 HNRNPA1-019 54280763-54282486 protein_coding
  ENST00000551803 HNRNPA1-022 54285947-54287087 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330752ENST00000340913ENST00000546500ENST00000547276ENST00000547566ENST00000547708ENST00000550482
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330752 N/A N/A 8.154±0.00 14.424±0.00 16.924±0.00 14.885±0.00 4.795±0.00 15.780±0.00 19.665±0.00 9.835±0.00 N/A 118.222±94.94 N/A N/A
ENST00000340913 108.033±0.00 130.322±0.00 N/A 59.873±0.00 73.415±0.00 65.920±59.25 20.198±18.80 47.690±0.00 10.718±4.46 49.559±0.00 72.527±0.00 146.058±145.75 130.490±27.63 60.346±28.15
ENST00000546500 N/A 16.649±0.00 N/A 3.196±0.00 N/A 5.950±0.00 0.834±0.00 N/A 3.173±1.15 N/A 2.270±0.00 14.377±10.54 N/A N/A
ENST00000547276 59.751±0.00 79.384±0.00 N/A 44.895±0.00 47.592±0.00 64.953±0.00 21.521±0.00 43.440±0.00 10.808±0.00 51.815±0.00 26.577±0.00 58.723±0.00 58.647±12.65 41.210±0.00
ENST00000547566 N/A N/A N/A N/A N/A N/A N/A N/A 8.017±0.00 38.416±0.00 N/A 255.745±0.00 98.543±21.57 N/A
ENST00000547708 190.881±0.00 216.918±0.00 26.193±0.00 73.421±57.27 95.278±59.29 129.833±99.24 31.252±21.59 56.512±36.63 36.046±10.31 75.734±46.89 49.415±12.67 319.058±276.81 524.487±0.00 191.690±40.29
ENST00000550482 95.306±0.00 103.143±0.00 N/A 49.858±0.00 N/A N/A N/A N/A N/A 13.089±0.00 N/A 200.831±35.14 157.503±0.00 73.830±23.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TM CIL_0002TM_0002 CGP 12:54230940-54287088
CIL_0002TL CIL_0002TL_0002 CGP 12:54280193-54301121

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003697 IDA single-stranded DNA binding
GO:0003723 TAS RNA binding
GO:0003727 IC single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006397 TAS mRNA processing
GO:0006405 IC RNA export from nucleus
GO:0008219 IEA cell death
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051028 IEA mRNA transport
GO:0051168 IDA nuclear export
GO:0051170 IDA nuclear import
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011020 hnrnpa1a heterogeneous nuclear ribonucleoprotein A1a protein_coding Danio_rerio
ENSDARG00000036675 hnrnpa1b heterogeneous nuclear ribonucleoprotein A1b protein_coding Danio_rerio

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