C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transforming growth factor, beta receptor associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135966 TGFBRAP1 9606 - 2:105264391-105330034 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258449 TGFBRAP1-201 105267121-105308321 protein_coding
  ENST00000393359 TGFBRAP1-001 105264414-105330034 protein_coding
  ENST00000595531 TGFBRAP1-202 105264391-105308321 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258449ENST00000393359ENST00000595531
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258449 N/A N/A N/A N/A N/A 1.210±0.00 N/A N/A 2.753±0.00 N/A 1.661±0.00 4.855±0.41 4.279±0.00 N/A
ENST00000393359 3.573±0.00 N/A N/A 3.413±0.00 4.296±0.00 1.118±0.14 0.628±0.00 4.111±0.00 0.865±0.00 1.938±0.00 3.944±0.00 2.669±1.41 2.551±0.00 1.990±0.00
ENST00000595531 2.649±0.00 7.311±0.00 1.797±0.00 1.035±0.46 N/A 1.246±0.00 1.098±0.83 N/A 0.515±0.00 0.474±0.00 0.479±0.00 4.531±0.61 4.778±0.73 1.375±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096O CIL_00096O_0001 VISTA 2:104780753-105381700
CIL_0003Y3 CIL_0003Y3_0001 CGP 2:105241743-105330034
CIL_0003Y4 CIL_0003Y4_0001 CGP 2:105264391-105349211

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005083 IEA small GTPase regulator activity
GO:0005160 IDA transforming growth factor beta receptor binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006886 IEA intracellular protein transport
GO:0007165 IDA signal transduction
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0046332 IDA SMAD binding
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061508 tgfbrap1 transforming growth factor, beta receptor associated protein 1 protein_coding Danio_rerio
ENSMUSG00000070939 Tgfbrap1 transforming growth factor, beta receptor associated protein 1 protein_coding Mus_musculus

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