C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein S9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135972 MRPS9 9606 + 2:105037983-105099960 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258455 MRPS9-001 105037983-105099960 protein_coding
  ENST00000413583 MRPS9-002 105089018-105097288 nonsense_mediated_decay
  ENST00000472220 MRPS9-003 105092098-105099900 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258455ENST00000472220
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258455 5.568±0.00 10.005±0.00 3.384±0.00 7.539±1.12 4.819±3.19 6.377±4.23 13.592±6.87 9.394±4.86 5.608±1.52 3.658±0.72 13.215±8.60 16.973±11.53 8.492±3.27 21.515±5.97
ENST00000472220 N/A N/A N/A N/A N/A 2.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JQ CIL_0007JQ_0001 UCNEbase 2:102922366-105081592
CIL_0008O2 CIL_0008O2_0001 VISTA 2:104536515-105137711
CIL_0008KZ CIL_0008KZ_0001 VISTA 2:104548528-105151080
CIL_000902 CIL_000902_0001 VISTA 2:104600279-105202032
CIL_00096O CIL_00096O_0001 VISTA 2:104780753-105381700
CIL_0004II CIL_0004II_0002 CGP 2:104855511-105099960
CIL_0003Y2 CIL_0003Y2_0001 CGP 2:105037983-105243049

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0005739 IDA mitochondrion
GO:0005763 NAS mitochondrial small ribosomal subunit
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0042769 NAS DNA damage response, detection of DNA damage
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061505 mrps9 mitochondrial ribosomal protein S9 protein_coding Danio_rerio
ENSMUSG00000060679 Mrps9 mitochondrial ribosomal protein S9 protein_coding Mus_musculus

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