C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: insulin-like growth factor 2 mRNA binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136231 IGF2BP3 9606 - 7:23310209-23470467 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258729 IGF2BP3-001 23310209-23470467 protein_coding
  ENST00000421467 IGF2BP3-004 23311241-23470455 nonsense_mediated_decay
  ENST00000465058 IGF2BP3-008 23351444-23431303 processed_transcript
  ENST00000466809 IGF2BP3-007 23347724-23431298 processed_transcript
  ENST00000467592 IGF2BP3-013 23317693-23347812 retained_intron
  ENST00000468005 IGF2BP3-005 23413244-23470360 retained_intron
  ENST00000468263 IGF2BP3-003 23347631-23467926 processed_transcript
  ENST00000469723 IGF2BP3-006 23351480-23431303 processed_transcript
  ENST00000474105 IGF2BP3-010 23351506-23402710 processed_transcript
  ENST00000476938 IGF2BP3-017 23361341-23470016 retained_intron
  ENST00000479504 IGF2BP3-009 23347699-23431296 processed_transcript
  ENST00000480547 IGF2BP3-012 23342066-23347812 retained_intron
  ENST00000491719 IGF2BP3-002 23351387-23469502 processed_transcript
  ENST00000492771 IGF2BP3-011 23347663-23394677 processed_transcript
  ENST00000495009 IGF2BP3-015 23342096-23346161 retained_intron
  ENST00000497563 IGF2BP3-014 23319138-23347803 processed_transcript
  ENST00000498363 IGF2BP3-016 23312373-23317833 retained_intron
  ENST00000619562 IGF2BP3-201 23311127-23347704 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonOvaryPlacentaTestisENST00000258729ENST00000479504ENST00000619562
Transcript ID Breast Colon Ovary Placenta Testis
ENST00000258729 N/A 0.098±0.00 4.668±2.63 10.436±5.66 2.006±1.22
ENST00000479504 N/A 1.570±0.00 N/A N/A N/A
ENST00000619562 0.189±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059M CIL_00059M_0001 CGP 7:23235967-23311729
CIL_0003DP CIL_0003DP_0001 CGP 7:23298739-23470467
CIL_00022J CIL_00022J_0001 CGP 7:23310209-23532041

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0009653 TAS anatomical structure morphogenesis
GO:0010467 TAS gene expression
GO:0017148 ISS negative regulation of translation
GO:0042035 IC regulation of cytokine biosynthetic process
GO:0044822 IDA poly(A) RNA binding
GO:0045182 ISS translation regulator activity
GO:0048027 IDA mRNA 5'-UTR binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010266 igf2bp3 insulin-like growth factor 2 mRNA binding protein 3 protein_coding Danio_rerio
ENSMUSG00000029814 Igf2bp3 insulin-like growth factor 2 mRNA binding protein 3 protein_coding Mus_musculus

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