Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	LIM domain containing 2
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSG00000136490	LIMD2	9606	-	17:63695902-63701172	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENST00000259006		LIMD2-001	63695902-63700140	protein_coding
	ENST00000578061		LIMD2-011	63698289-63699861	protein_coding
	ENST00000578067		LIMD2-004	63697816-63700108	retained_intron
	ENST00000578297		LIMD2-012	63698498-63699344	retained_intron
	ENST00000578402		LIMD2-002	63697816-63700685	protein_coding
	ENST00000578993		LIMD2-010	63698335-63700102	protein_coding
	ENST00000579329		LIMD2-005	63698256-63699362	retained_intron
	ENST00000579814		LIMD2-008	63698467-63700132	retained_intron
	ENST00000580222		LIMD2-009	63698189-63700113	nonsense_mediated_decay
	ENST00000582055		LIMD2-006	63698478-63699162	protein_coding
	ENST00000583211		LIMD2-003	63697833-63700132	protein_coding
	ENST00000584645		LIMD2-007	63698609-63701172	protein_coding

Expression Patterns

Transcript ID	Adrenal	Brain	Colon	Liver	Lung	Ovary	Placenta
ENST00000259006	14.229±0.00	0.892±0.00	4.046±0.00	1.145±0.00	9.747±0.00	4.597±0.00	5.404±0.00
ENST00000578402	N/A	N/A	N/A	N/A	N/A	N/A	16.346±0.00
ENST00000583211	100.455±0.00	N/A	N/A	N/A	N/A	N/A	20.541±1.81

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0009B9	CIL_0009B9_0001	VISTA	17:63374232-63977730
CIL_0002QS	CIL_0002QS_0001	CGP	17:63600872-63696303
CIL_0003AI	CIL_0003AI_0002	CGP	17:63622415-63701172

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0008270	IEA	zinc ion binding

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000078092	limd2	LIM domain containing 2	protein_coding	Danio_rerio
ENSMUSG00000040699	Limd2	LIM domain containing 2	protein_coding	Mus_musculus

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