C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transformer 2 beta homolog (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136527 TRA2B 9606 - 3:185915906-185938136 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000259043 TRA2B-014 185917155-185923893 protein_coding
  ENST00000342294 TRA2B-017 185931754-185938013 protein_coding
  ENST00000382191 TRA2B-008 185917715-185938103 protein_coding
  ENST00000414862 TRA2B-016 185917328-185922107 protein_coding
  ENST00000453386 TRA2B-001 185915906-185938136 protein_coding
  ENST00000456380 TRA2B-003 185917330-185938029 nonsense_mediated_decay
  ENST00000463328 TRA2B-006 185916749-185925264 retained_intron
  ENST00000465245 TRA2B-010 185922043-185937998 processed_transcript
  ENST00000466832 TRA2B-007 185917329-185923809 retained_intron
  ENST00000471134 TRA2B-012 185926727-185936600 processed_transcript
  ENST00000477939 TRA2B-013 185925273-185931618 retained_intron
  ENST00000480461 TRA2B-009 185931515-185938024 retained_intron
  ENST00000485530 TRA2B-011 185925085-185937987 retained_intron
  ENST00000487615 TRA2B-004 185917329-185937420 retained_intron
  ENST00000492417 TRA2B-005 185916744-185929073 retained_intron
  ENST00000493864 TRA2B-015 185925230-185926770 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259043ENST00000382191ENST00000453386ENST00000456380ENST00000466832ENST00000480461ENST00000485530ENST00000487615ENST00000492417
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.668±0.00 31.716±0.00
ENST00000382191 N/A N/A 13.716±7.77 N/A 12.892±0.00 9.231±0.00 34.959±0.00 N/A 37.661±0.00 10.195±2.49 106.312±0.00 33.398±0.00 24.799±0.00
ENST00000453386 N/A N/A 1.548±0.00 N/A N/A N/A N/A N/A N/A N/A 5.456±0.00 6.277±0.00 N/A
ENST00000456380 12.484±0.00 N/A 1.412±0.00 9.794±2.91 8.034±1.08 N/A 5.502±0.00 N/A N/A 4.760±0.33 44.689±28.72 21.729±0.00 18.714±0.00
ENST00000466832 N/A N/A 1.432±0.00 N/A N/A N/A N/A 2.424±0.00 N/A N/A 13.570±0.00 N/A N/A
ENST00000480461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.336±0.00 N/A
ENST00000485530 N/A 9.991±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487615 N/A 2.863±0.00 1.022±0.00 N/A N/A 1.398±0.00 N/A 3.145±0.00 N/A N/A N/A N/A N/A
ENST00000492417 N/A N/A 1.552±0.00 N/A 4.026±0.00 1.097±0.00 3.475±0.00 2.176±0.00 N/A 1.295±0.00 5.032±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0001 VISTA 3:185444884-186046681
CIL_0003YC CIL_0003YC_0002 CGP 3:185643739-185938136
CIL_0006RI CIL_0006RI_0001 CGP 3:185915906-186110318

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding
GO:0048026 IDA positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002168 tra2b transformer 2 beta homolog (Drosophila) protein_coding Danio_rerio
ENSMUSG00000022858 Tra2b transformer 2 beta homolog (Drosophila) protein_coding Mus_musculus

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