C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GTPase activating Rap/RanGAP domain-like 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136895 GARNL3 9606 + 9:127224265-127393660 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373386 GARNL3-001 127264923-127393539 nonsense_mediated_decay
  ENST00000373387 GARNL3-003 127264526-127393660 protein_coding
  ENST00000425970 GARNL3-012 127263662-127320778 protein_coding
  ENST00000429629 GARNL3-011 127224539-127320778 nonsense_mediated_decay
  ENST00000435213 GARNL3-201 127263662-127393547 protein_coding
  ENST00000439286 GARNL3-005 127224265-127333086 protein_coding
  ENST00000441134 GARNL3-018 127225355-127318127 nonsense_mediated_decay
  ENST00000444677 GARNL3-016 127224471-127313470 protein_coding
  ENST00000446764 GARNL3-009 127225239-127311677 protein_coding
  ENST00000453030 GARNL3-017 127224626-127313560 nonsense_mediated_decay
  ENST00000460176 GARNL3-022 127342315-127355449 nonsense_mediated_decay
  ENST00000463005 GARNL3-010 127388412-127393134 retained_intron
  ENST00000464616 GARNL3-015 127265002-127339750 processed_transcript
  ENST00000478696 GARNL3-006 127355308-127369118 processed_transcript
  ENST00000478702 GARNL3-019 127245337-127320778 processed_transcript
  ENST00000481242 GARNL3-013 127361716-127393538 retained_intron
  ENST00000481875 GARNL3-014 127353518-127355391 retained_intron
  ENST00000487565 GARNL3-021 127264513-127311676 processed_transcript
  ENST00000495172 GARNL3-007 127313353-127336222 retained_intron
  ENST00000496711 GARNL3-004 127355356-127393539 processed_transcript
  ENST00000497703 GARNL3-008 127387130-127389005 retained_intron
  ENST00000498801 GARNL3-020 127264236-127320768 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373386ENST00000373387ENST00000435213ENST00000441134ENST00000444677ENST00000446764ENST00000453030ENST00000460176ENST00000478702ENST00000481242ENST00000496711
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373386 0.351±0.00 2.488±0.00 N/A 8.630±0.00 0.349±0.00 0.708±0.00 1.905±0.00 0.745±0.00 0.065±0.00 0.401±0.00 0.371±0.00 1.423±0.67 N/A 3.597±0.00
ENST00000373387 N/A N/A N/A 4.532±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435213 N/A N/A N/A N/A N/A N/A 0.274±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000441134 N/A N/A N/A N/A N/A 1.253±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444677 N/A N/A N/A N/A N/A N/A N/A N/A 4.533±0.00 N/A N/A N/A N/A N/A
ENST00000446764 N/A N/A N/A N/A N/A N/A N/A 1.857±0.00 N/A N/A N/A N/A N/A N/A
ENST00000453030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.779±0.00 N/A N/A N/A
ENST00000460176 N/A N/A N/A N/A N/A 2.592±0.00 1.970±0.00 2.524±0.00 N/A N/A N/A 1.970±0.00 N/A N/A
ENST00000478702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.852±0.00 N/A N/A N/A
ENST00000481242 0.175±0.00 0.963±0.00 0.451±0.00 1.578±0.00 0.354±0.08 0.197±0.00 0.343±0.00 0.180±0.04 0.340±0.26 0.234±0.00 0.070±0.00 0.602±0.24 0.081±0.00 0.601±0.00
ENST00000496711 N/A N/A N/A N/A 0.609±0.00 N/A N/A 0.674±0.00 0.182±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005083 IEA small GTPase regulator activity
GO:0005096 IEA GTPase activator activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060631 GARNL3 GTPase-activating Rap/Ran-GAP domain-like protein 3-like (garnl3), mRNA protein_coding Danio_rerio
ENSMUSG00000038860 Garnl3 GTPase activating RANGAP domain-like 3 protein_coding Mus_musculus

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