C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: xeroderma pigmentosum, complementation group A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136936 XPA 9606 - 9:97674909-97697357 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375128 XPA-001 97674909-97697357 protein_coding
  ENST00000462523 XPA-003 97674909-97697293 nonsense_mediated_decay
  ENST00000485042 XPA-004 97675067-97675955 processed_transcript
  ENST00000496104 XPA-002 97684961-97697295 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375128ENST00000462523ENST00000485042ENST00000496104
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375128 5.501±0.00 7.305±0.00 0.565±0.00 5.490±3.50 5.742±3.31 3.447±2.41 1.274±0.69 3.402±1.98 3.279±0.13 1.732±0.12 1.866±0.95 5.505±2.41 2.833±0.16 5.722±0.61
ENST00000462523 N/A N/A N/A N/A N/A N/A 0.440±0.00 1.546±0.00 N/A 0.525±0.00 N/A 1.251±0.31 0.328±0.00 1.650±0.00
ENST00000485042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.081±0.00 N/A N/A
ENST00000496104 3.920±0.00 N/A N/A N/A N/A N/A 1.788±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0001 VISTA 9:97562581-98164397
CIL_000853 CIL_000853_0001 VISTA 9:97573936-98178227
CIL_0009AR CIL_0009AR_0001 VISTA 9:97573936-98175680
CIL_00029T CIL_00029T_0001 CGP 9:97633626-97697357
CIL_00029U CIL_00029U_0001 CGP 9:97674909-97856715

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0003684 IDA:IEA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005662 IDA DNA replication factor A complex
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0006281 TAS DNA repair
GO:0006289 TAS:IEA nucleotide-excision repair
GO:0006979 IEA response to oxidative stress
GO:0008630 IEA intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 IEA response to UV
GO:0009636 IEA response to toxic substance
GO:0019904 IPI protein domain specific binding
GO:0035264 IEA multicellular organism growth
GO:0042803 IPI protein homodimerization activity
GO:0045171 IDA intercellular bridge
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038114 xpa xeroderma pigmentosum, complementation group A protein_coding Danio_rerio
ENSMUSG00000028329 Xpa xeroderma pigmentosum, complementation group A protein_coding Mus_musculus

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