C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box P4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137166 FOXP4 9606 + 6:41546426-41602384 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307972 FOXP4-002 41565749-41600626 protein_coding
  ENST00000373057 FOXP4-003 41546648-41599963 protein_coding
  ENST00000373060 FOXP4-201 41546426-41602383 protein_coding
  ENST00000373063 FOXP4-001 41546426-41602384 protein_coding
  ENST00000409208 FOXP4-006 41546573-41599959 protein_coding
  ENST00000451305 FOXP4-004 41570174-41584818 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307972ENST00000373057ENST00000373063ENST00000409208
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307972 6.381±0.00 4.408±0.00 1.015±0.00 2.664±2.52 8.301±6.63 15.280±0.00 4.411±0.00 7.979±0.00 6.053±0.00 7.832±7.28 5.829±0.00 13.681±8.10 5.808±1.86 18.359±11.64
ENST00000373057 N/A N/A N/A N/A N/A N/A 0.169±0.00 N/A 0.506±0.00 N/A N/A N/A N/A 1.937±0.00
ENST00000373063 N/A 1.151±0.00 N/A 0.031±0.00 1.840±0.00 N/A N/A 0.661±0.02 N/A N/A N/A 2.374±0.79 0.349±0.00 N/A
ENST00000409208 6.073±0.00 3.491±0.00 N/A 3.875±0.00 3.804±2.83 2.743±1.53 3.400±0.00 N/A 2.631±0.00 0.679±0.00 1.557±1.26 13.315±3.98 1.743±0.60 7.678±4.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F3 CIL_0008F3_0001 VISTA 6:41112821-41713777
CIL_0007QG CIL_0007QG_0001 VISTA 6:41166717-41767957
CIL_0008IB CIL_0008IB_0001 VISTA 6:41169077-41770286
CIL_0008XI CIL_0008XI_0001 VISTA 6:41187113-41790491
CIL_00093V CIL_00093V_0001 VISTA 6:41255486-41855939
CIL_000963 CIL_000963_0001 VISTA 6:41292979-41894337
CIL_00028Z CIL_00028Z_0002 CGP 6:41546426-41654246

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007507 IEA heart development
GO:0042803 IEA protein homodimerization activity
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0046982 IEA protein heterodimerization activity
GO:0048617 IEA embryonic foregut morphogenesis
GO:0061140 IEA lung secretory cell differentiation
GO:1901249 IEA regulation of lung goblet cell differentiation
GO:1901250 IEA negative regulation of lung goblet cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076120 foxp4 forkhead box P4 protein_coding Danio_rerio
ENSMUSG00000023991 Foxp4 forkhead box P4 protein_coding Mus_musculus

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