C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cell growth regulator with EF-hand domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138028 CGREF1 9606 - 2:27098889-27119115 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000260595 CGREF1-201 27101079-27118910 protein_coding
  ENST00000312734 CGREF1-005 27101113-27119030 protein_coding
  ENST00000402394 CGREF1-001 27100594-27119103 protein_coding
  ENST00000402550 CGREF1-003 27098889-27119115 protein_coding
  ENST00000404694 CGREF1-006 27101226-27104737 protein_coding
  ENST00000405600 CGREF1-004 27101027-27118905 protein_coding
  ENST00000440612 CGREF1-002 27098889-27119097 nonsense_mediated_decay
  ENST00000467539 CGREF1-007 27102117-27104359 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260595ENST00000312734ENST00000402394ENST00000402550ENST00000405600ENST00000440612
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260595 1.182±0.00 2.082±0.00 5.834±0.00 3.381±0.00 0.240±0.00 0.209±0.00 N/A N/A 0.162±0.00 0.645±0.41 6.701±0.00 0.209±0.00 3.616±0.00
ENST00000312734 N/A N/A N/A 0.964±0.00 N/A N/A N/A 0.134±0.00 N/A 0.793±0.00 N/A 0.238±0.00 N/A
ENST00000402394 N/A N/A 5.201±0.00 N/A N/A 0.174±0.00 N/A N/A N/A N/A N/A N/A 1.370±0.00
ENST00000402550 1.102±0.00 2.136±0.00 4.480±1.87 2.170±0.00 2.479±0.00 0.238±0.00 16.370±0.00 20.745±0.00 N/A 0.936±0.00 3.734±3.51 0.356±0.00 3.899±0.00
ENST00000405600 N/A N/A N/A N/A N/A N/A N/A N/A 0.553±0.00 N/A N/A N/A N/A
ENST00000440612 N/A N/A N/A N/A N/A N/A 8.838±0.00 N/A 0.198±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EL CIL_0000EL_0001 CGP 2:27078567-27100772
CIL_0000EK CIL_0000EK_0001 CGP 2:27086747-27119115

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0006950 TAS response to stress
GO:0007050 IEA cell cycle arrest
GO:0007155 IEA cell adhesion
GO:0008285 TAS negative regulation of cell proliferation
GO:0030308 IEA negative regulation of cell growth

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075444 CGREF1 cell growth regulator with EF-hand domain 1 protein_coding Danio_rerio
ENSMUSG00000029161 Cgref1 cell growth regulator with EF hand domain 1 protein_coding Mus_musculus

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