C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S24
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138326 RPS24 9606 + 10:78033760-78056812 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360830 RPS24-003 78033883-78040697 protein_coding
  ENST00000372360 RPS24-001 78033865-78040697 protein_coding
  ENST00000435275 RPS24-201 78033760-78040713 protein_coding
  ENST00000440692 RPS24-202 78033760-78056812 protein_coding
  ENST00000464716 RPS24-007 78033874-78037472 processed_transcript
  ENST00000465692 RPS24-008 78035352-78054676 processed_transcript
  ENST00000466129 RPS24-005 78033886-78036086 retained_intron
  ENST00000475468 RPS24-004 78033904-78035654 processed_transcript
  ENST00000476545 RPS24-009 78033878-78054931 processed_transcript
  ENST00000478655 RPS24-006 78033863-78037602 retained_intron
  ENST00000480662 RPS24-012 78039598-78040697 retained_intron
  ENST00000482069 RPS24-010 78033917-78040696 processed_transcript
  ENST00000485708 RPS24-002 78033844-78040670 processed_transcript
  ENST00000613865 RPS24-203 78033760-78037335 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360830ENST00000372360ENST00000435275ENST00000464716ENST00000485708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360830 420.235±0.00 511.409±0.00 13.050±0.00 148.085±32.12 272.893±86.57 293.323±234.77 77.663±60.14 128.050±58.52 143.776±34.22 398.325±309.37 69.650±49.76 1156.288±899.87 723.173±67.90 410.152±58.20
ENST00000372360 136.060±0.00 158.003±0.00 N/A N/A 82.014±0.00 N/A N/A N/A 84.507±0.00 31.788±0.00 N/A 579.228±476.46 147.457±0.00 122.597±0.00
ENST00000435275 N/A N/A 17.368±0.00 N/A 114.995±0.00 116.266±70.41 N/A 86.855±71.10 49.279±29.28 100.032±76.50 92.591±0.00 161.920±135.21 140.690±42.43 90.992±0.00
ENST00000464716 N/A N/A 30.166±0.00 N/A N/A 72.328±0.00 15.229±0.00 43.677±0.00 65.094±0.00 33.518±0.00 N/A 96.356±0.00 N/A N/A
ENST00000485708 N/A N/A N/A 50.261±7.14 N/A 100.626±0.00 80.339±49.22 N/A 46.402±0.00 N/A 368.269±283.32 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A5 CIL_0008A5_0001 VISTA 10:77875813-78480338
CIL_00084G CIL_00084G_0001 VISTA 10:77912633-78517575
CIL_000809 CIL_000809_0001 VISTA 10:77918028-78521061
CIL_0007IB CIL_0007IB_0001 CGP 10:77969251-78056812
CIL_0007AW CIL_0007AW_0002 CGP 10:78033760-79316528

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000462 IBA maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IBA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006364 IMP rRNA processing
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 ISS small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0031369 ISS translation initiation factor binding
GO:0034101 IMP erythrocyte homeostasis
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039347 rps24 ribosomal protein S24 protein_coding Danio_rerio
ENSMUSG00000025290 Rps24 ribosomal protein S24 protein_coding Mus_musculus

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