C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: shroom family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138771 SHROOM3 9606 + 4:76435100-76783253 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296043 SHROOM3-001 76435100-76783253 protein_coding
  ENST00000466541 SHROOM3-006 76436146-76559576 processed_transcript
  ENST00000469923 SHROOM3-007 76555614-76754586 processed_transcript
  ENST00000473602 SHROOM3-013 76709767-76738993 processed_transcript
  ENST00000481002 SHROOM3-008 76586255-76738835 processed_transcript
  ENST00000484236 SHROOM3-011 76586313-76587265 processed_transcript
  ENST00000485780 SHROOM3-010 76586286-76645645 processed_transcript
  ENST00000486758 SHROOM3-004 76689571-76742130 retained_intron
  ENST00000490690 SHROOM3-009 76586140-76645354 processed_transcript
  ENST00000497440 SHROOM3-012 76436112-76645645 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungMuscleOvaryENST00000296043ENST00000469923ENST00000473602ENST00000486758
Transcript ID Brain Breast Colon Kidney Liver Lung Muscle Ovary
ENST00000296043 0.548±0.18 N/A N/A 0.953±0.00 N/A N/A 0.005±0.00 N/A
ENST00000469923 N/A N/A N/A N/A N/A N/A 0.156±0.00 N/A
ENST00000473602 N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A
ENST00000486758 0.634±0.00 4.450±0.00 6.531±0.00 2.667±0.00 3.671±0.00 1.589±0.00 0.120±0.00 6.373±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0001 VISTA 4:76031495-76631676
CIL_00071O CIL_00071O_0001 CGP 4:76312997-76783253
CIL_00069W CIL_00069W_0001 CGP 4:76435100-76898147

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 ISS cell morphogenesis
GO:0001843 IEA neural tube closure
GO:0002066 IEA columnar/cuboidal epithelial cell development
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005856 ISS cytoskeleton
GO:0005874 IEA microtubule
GO:0005912 ISS adherens junction
GO:0007389 ISS pattern specification process
GO:0008360 IEA regulation of cell shape
GO:0016324 ISS apical plasma membrane
GO:0030036 IEA actin cytoskeleton organization
GO:0043296 ISS apical junction complex
GO:0043482 ISS cellular pigment accumulation
GO:0045176 ISS apical protein localization
GO:0045177 IEA apical part of cell
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090422 SHROOM3 shroom family member 3 protein_coding Danio_rerio
ENSMUSG00000029381 Shroom3 shroom family member 3 protein_coding Mus_musculus

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