C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ceramide synthase 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139624 CERS5 9606 - 12:50129306-50167533 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317551 CERS5-001 50129798-50167422 protein_coding
  ENST00000380189 CERS5-003 50129798-50167320 nonsense_mediated_decay
  ENST00000422340 CERS5-201 50129306-50167533 protein_coding
  ENST00000438450 CERS5-002 50134620-50167393 nonsense_mediated_decay
  ENST00000542320 CERS5-026 50135519-50167300 nonsense_mediated_decay
  ENST00000546406 CERS5-018 50129858-50133165 retained_intron
  ENST00000546514 CERS5-012 50143165-50167359 nonsense_mediated_decay
  ENST00000546676 CERS5-022 50135440-50137793 retained_intron
  ENST00000547138 CERS5-024 50135406-50137816 processed_transcript
  ENST00000547455 CERS5-011 50143138-50167369 nonsense_mediated_decay
  ENST00000547787 CERS5-004 50129799-50167303 nonsense_mediated_decay
  ENST00000547800 CERS5-020 50135732-50167343 protein_coding
  ENST00000547852 CERS5-007 50165936-50167300 processed_transcript
  ENST00000548930 CERS5-009 50142080-50144499 processed_transcript
  ENST00000548942 CERS5-023 50133785-50135537 processed_transcript
  ENST00000549089 CERS5-015 50135958-50143372 retained_intron
  ENST00000549389 CERS5-010 50143074-50167328 nonsense_mediated_decay
  ENST00000549942 CERS5-013 50144019-50167505 processed_transcript
  ENST00000550079 CERS5-021 50130413-50134828 retained_intron
  ENST00000550258 CERS5-008 50143080-50167326 nonsense_mediated_decay
  ENST00000550547 CERS5-016 50134573-50142093 protein_coding
  ENST00000550899 CERS5-025 50144349-50167369 nonsense_mediated_decay
  ENST00000550919 CERS5-019 50129798-50136013 protein_coding
  ENST00000551005 CERS5-005 50129799-50144136 retained_intron
  ENST00000551384 CERS5-014 50143072-50144371 retained_intron
  ENST00000551697 CERS5-027 50129792-50167302 nonsense_mediated_decay
  ENST00000551757 CERS5-028 50133079-50134706 retained_intron
  ENST00000553122 CERS5-017 50129798-50135792 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317551ENST00000380189ENST00000422340ENST00000438450ENST00000546406ENST00000550079ENST00000550547ENST00000550899ENST00000550919ENST00000551005ENST00000551757ENST00000553122
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317551 9.812±0.00 7.262±0.00 0.818±0.00 4.263±0.00 4.605±3.31 3.811±1.83 1.824±0.00 5.120±4.44 1.398±0.52 3.263±2.04 0.562±0.00 11.505±8.85 13.191±1.58 7.035±2.17
ENST00000380189 N/A N/A 1.210±0.00 N/A N/A N/A N/A N/A 0.419±0.00 N/A N/A N/A N/A N/A
ENST00000422340 1.980±0.00 3.589±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438450 N/A N/A N/A 1.949±0.00 N/A N/A N/A N/A N/A N/A 0.873±0.00 15.116±0.00 N/A N/A
ENST00000546406 N/A N/A N/A 7.482±0.00 N/A N/A N/A N/A N/A N/A 1.321±0.00 16.563±0.00 N/A 6.729±0.00
ENST00000550079 N/A N/A N/A N/A 3.178±0.00 N/A N/A N/A 2.917±0.00 N/A N/A 27.805±0.00 17.899±0.00 11.004±0.00
ENST00000550547 N/A N/A N/A N/A N/A N/A N/A N/A 5.428±0.00 N/A N/A N/A 26.800±0.00 17.249±0.00
ENST00000550899 N/A N/A N/A N/A N/A N/A 5.363±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000550919 4.688±0.00 N/A N/A N/A N/A 5.829±0.00 N/A N/A N/A 4.340±0.00 N/A N/A 8.576±0.00 N/A
ENST00000551005 N/A N/A N/A N/A N/A N/A N/A N/A 0.474±0.00 N/A N/A N/A N/A N/A
ENST00000551757 N/A N/A N/A 1.263±0.00 N/A N/A N/A N/A N/A N/A 0.478±0.00 N/A N/A N/A
ENST00000553122 N/A N/A N/A 3.674±1.80 N/A 3.902±0.00 N/A N/A 1.717±0.00 N/A 1.441±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_00033M CIL_00033M_0002 CGP 12:50111979-50167533
CIL_0000LJ CIL_0000LJ_0001 CGP 12:50129306-50283546

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006665 TAS sphingolipid metabolic process
GO:0016021 IEA integral component of membrane
GO:0030148 TAS sphingolipid biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046513 IDA ceramide biosynthetic process
GO:0050291 IDA sphingosine N-acyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002365 cers5 ceramide synthase 5 protein_coding Danio_rerio
ENSMUSG00000023021 Cers5 ceramide synthase 5 protein_coding Mus_musculus

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