C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139865 TTC6 9606 + 14:37595847-38041442 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267368 TTC6-201 37795308-37842348 protein_coding
  ENST00000382320 TTC6-202 37795308-37842348 protein_coding
  ENST00000476979 TTC6-002 37772383-37842694 protein_coding
  ENST00000478811 TTC6-003 37795308-37842348 nonsense_mediated_decay
  ENST00000533625 TTC6-005 37611251-38041442 nonsense_mediated_decay
  ENST00000553443 TTC6-001 37622065-37842463 protein_coding
  ENST00000553887 TTC6-008 37971989-38041442 processed_transcript
  ENST00000554555 TTC6-004 37796294-37802390 processed_transcript
  ENST00000555921 TTC6-007 37827301-37841695 nonsense_mediated_decay
  ENST00000556845 TTC6-006 37595847-37622318 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverPlacentaTestisENST00000267368ENST00000478811ENST00000533625ENST00000553443ENST00000554555
Transcript ID Adipose Brain Breast Heart Kidney Liver Placenta Testis
ENST00000267368 N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A
ENST00000478811 N/A N/A N/A N/A N/A N/A N/A 2.019±0.00
ENST00000533625 N/A 0.058±0.05 N/A N/A N/A N/A N/A N/A
ENST00000553443 N/A N/A 0.307±0.00 N/A 0.444±0.00 0.167±0.00 N/A 1.531±0.83
ENST00000554555 0.119±0.00 0.453±0.00 N/A 0.182±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005R8 CIL_0005R8_0002 CGP 14:37197913-37596059
CIL_0005R7 CIL_0005R7_0002 CGP 14:37589984-38041442
CIL_0005HH CIL_0005HH_0002 CGP 14:37595847-38213067

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058377 ttc6 tetratricopeptide repeat domain 6 protein_coding Danio_rerio

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