C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 24, type 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139880 CDH24 9606 - 14:23047062-23057538 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267383 CDH24-006 23047660-23055826 protein_coding
  ENST00000397359 CDH24-201 23047062-23057538 protein_coding
  ENST00000485922 CDH24-005 23047067-23050139 processed_transcript
  ENST00000487137 CDH24-202 23047062-23057538 protein_coding
  ENST00000554034 CDH24-007 23047660-23055826 protein_coding
  ENST00000610348 CDH24-203 23047062-23057538 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000267383ENST00000397359ENST00000485922ENST00000487137ENST00000554034ENST00000610348
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000267383 N/A 1.014±0.00 N/A 0.827±0.00 N/A N/A N/A N/A N/A 0.902±0.00 N/A N/A N/A 0.743±0.00
ENST00000397359 0.176±0.00 0.199±0.00 N/A N/A N/A N/A 0.280±0.00 N/A N/A N/A N/A N/A N/A 0.777±0.00
ENST00000485922 N/A 0.499±0.00 N/A N/A N/A 0.571±0.00 0.181±0.00 N/A 0.120±0.00 0.619±0.00 0.342±0.00 1.852±0.00 0.533±0.01 0.979±0.09
ENST00000487137 0.625±0.00 N/A N/A 0.968±0.00 0.716±0.00 0.420±0.00 N/A 0.218±0.00 0.112±0.00 0.349±0.14 N/A 2.352±0.26 0.750±0.51 N/A
ENST00000554034 0.328±0.00 0.454±0.00 N/A 0.557±0.00 0.831±0.10 0.447±0.31 0.079±0.00 0.364±0.22 N/A 1.170±0.00 N/A 0.570±0.22 0.183±0.08 1.504±0.00
ENST00000610348 N/A N/A 0.466±0.00 0.691±0.00 N/A N/A N/A 0.564±0.00 N/A N/A 0.066±0.00 N/A 0.230±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MR CIL_0006MR_0001 CGP 14:23042167-23057538

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IDA:IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0005911 IDA cell-cell junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008013 IPI beta-catenin binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016337 IDA single organismal cell-cell adhesion
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization
GO:0045294 IPI alpha-catenin binding
GO:0070097 IPI delta-catenin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000059674 Cdh24 cadherin-like 24 protein_coding Mus_musculus

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