C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: reticulon 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139970 RTN1 9606 - 14:59595976-59870966 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267484 RTN1-001 59595977-59870966 protein_coding
  ENST00000342503 RTN1-002 59595977-59630814 protein_coding
  ENST00000395090 RTN1-003 59595977-59630609 protein_coding
  ENST00000432103 RTN1-009 59596005-59727713 retained_intron
  ENST00000474911 RTN1-004 59596014-59607607 retained_intron
  ENST00000481205 RTN1-005 59595976-59606102 retained_intron
  ENST00000490111 RTN1-006 59603761-59605509 retained_intron
  ENST00000557422 RTN1-008 59596757-59630612 processed_transcript
  ENST00000611068 RTN1-201 59596328-59870752 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000267484ENST00000342503ENST00000432103ENST00000474911ENST00000481205ENST00000557422ENST00000611068
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000267484 1.585±0.00 N/A 0.140±0.00 21.548±0.00 2.039±0.00 N/A 0.103±0.04 0.287±0.00 0.762±0.00 0.607±0.00 0.405±0.00 2.176±0.00 0.560±0.00 1.071±0.00
ENST00000342503 N/A N/A N/A 115.105±75.69 N/A 3.861±0.00 0.092±0.00 N/A N/A N/A N/A N/A 0.959±0.00 N/A
ENST00000432103 7.608±0.00 1.902±0.00 0.383±0.00 N/A 1.676±0.00 0.736±0.00 0.105±0.00 0.410±0.00 0.085±0.00 1.041±0.00 N/A N/A 0.715±0.33 N/A
ENST00000474911 N/A 0.891±0.00 N/A 84.349±23.62 N/A 1.078±0.08 N/A N/A N/A N/A 0.034±0.00 0.299±0.12 N/A 1.243±0.39
ENST00000481205 N/A N/A N/A N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A
ENST00000557422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.383±0.00 0.309±0.00 N/A N/A
ENST00000611068 8.855±0.00 3.018±0.00 N/A 55.367±0.00 4.047±0.00 1.545±0.00 0.234±0.00 0.746±0.06 N/A 1.634±0.95 N/A 0.912±0.82 1.567±0.44 0.935±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S5 CIL_0000S5_0001 CGP 14:59504539-59870966
CIL_0005ZY CIL_0005ZY_0002 CGP 14:59595976-60063559

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane
GO:0030176 TAS integral component of endoplasmic reticulum membrane
GO:0030182 IEP neuron differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006497 rtn1a reticulon 1a protein_coding Danio_rerio
ENSDARG00000021143 rtn1b reticulon 1b protein_coding Danio_rerio
ENSMUSG00000021087 Rtn1 reticulon 1 protein_coding Mus_musculus

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